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Research Paper – Structure, Examples and Writing Guide

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Research Paper

Definition:

Research Paper is a written document that presents the author’s original research, analysis, and interpretation of a specific topic or issue.

It is typically based on Empirical Evidence, and may involve qualitative or quantitative research methods, or a combination of both. The purpose of a research paper is to contribute new knowledge or insights to a particular field of study, and to demonstrate the author’s understanding of the existing literature and theories related to the topic.

Structure of Research Paper

The structure of a research paper typically follows a standard format, consisting of several sections that convey specific information about the research study. The following is a detailed explanation of the structure of a research paper:

The title page contains the title of the paper, the name(s) of the author(s), and the affiliation(s) of the author(s). It also includes the date of submission and possibly, the name of the journal or conference where the paper is to be published.

The abstract is a brief summary of the research paper, typically ranging from 100 to 250 words. It should include the research question, the methods used, the key findings, and the implications of the results. The abstract should be written in a concise and clear manner to allow readers to quickly grasp the essence of the research.

Introduction

The introduction section of a research paper provides background information about the research problem, the research question, and the research objectives. It also outlines the significance of the research, the research gap that it aims to fill, and the approach taken to address the research question. Finally, the introduction section ends with a clear statement of the research hypothesis or research question.

Literature Review

The literature review section of a research paper provides an overview of the existing literature on the topic of study. It includes a critical analysis and synthesis of the literature, highlighting the key concepts, themes, and debates. The literature review should also demonstrate the research gap and how the current study seeks to address it.

The methods section of a research paper describes the research design, the sample selection, the data collection and analysis procedures, and the statistical methods used to analyze the data. This section should provide sufficient detail for other researchers to replicate the study.

The results section presents the findings of the research, using tables, graphs, and figures to illustrate the data. The findings should be presented in a clear and concise manner, with reference to the research question and hypothesis.

The discussion section of a research paper interprets the findings and discusses their implications for the research question, the literature review, and the field of study. It should also address the limitations of the study and suggest future research directions.

The conclusion section summarizes the main findings of the study, restates the research question and hypothesis, and provides a final reflection on the significance of the research.

The references section provides a list of all the sources cited in the paper, following a specific citation style such as APA, MLA or Chicago.

How to Write Research Paper

You can write Research Paper by the following guide:

• Choose a Topic: The first step is to select a topic that interests you and is relevant to your field of study. Brainstorm ideas and narrow down to a research question that is specific and researchable.
• Conduct a Literature Review: The literature review helps you identify the gap in the existing research and provides a basis for your research question. It also helps you to develop a theoretical framework and research hypothesis.
• Develop a Thesis Statement : The thesis statement is the main argument of your research paper. It should be clear, concise and specific to your research question.
• Plan your Research: Develop a research plan that outlines the methods, data sources, and data analysis procedures. This will help you to collect and analyze data effectively.
• Collect and Analyze Data: Collect data using various methods such as surveys, interviews, observations, or experiments. Analyze data using statistical tools or other qualitative methods.
• Organize your Paper : Organize your paper into sections such as Introduction, Literature Review, Methods, Results, Discussion, and Conclusion. Ensure that each section is coherent and follows a logical flow.
• Write your Paper : Start by writing the introduction, followed by the literature review, methods, results, discussion, and conclusion. Ensure that your writing is clear, concise, and follows the required formatting and citation styles.
• Edit and Proofread your Paper: Review your paper for grammar and spelling errors, and ensure that it is well-structured and easy to read. Ask someone else to review your paper to get feedback and suggestions for improvement.
• Cite your Sources: Ensure that you properly cite all sources used in your research paper. This is essential for giving credit to the original authors and avoiding plagiarism.

Research Paper Example

Note : The below example research paper is for illustrative purposes only and is not an actual research paper. Actual research papers may have different structures, contents, and formats depending on the field of study, research question, data collection and analysis methods, and other factors. Students should always consult with their professors or supervisors for specific guidelines and expectations for their research papers.

Research Paper Example sample for Students:

Title: The Impact of Social Media on Mental Health among Young Adults

Abstract: This study aims to investigate the impact of social media use on the mental health of young adults. A literature review was conducted to examine the existing research on the topic. A survey was then administered to 200 university students to collect data on their social media use, mental health status, and perceived impact of social media on their mental health. The results showed that social media use is positively associated with depression, anxiety, and stress. The study also found that social comparison, cyberbullying, and FOMO (Fear of Missing Out) are significant predictors of mental health problems among young adults.

Introduction: Social media has become an integral part of modern life, particularly among young adults. While social media has many benefits, including increased communication and social connectivity, it has also been associated with negative outcomes, such as addiction, cyberbullying, and mental health problems. This study aims to investigate the impact of social media use on the mental health of young adults.

Literature Review: The literature review highlights the existing research on the impact of social media use on mental health. The review shows that social media use is associated with depression, anxiety, stress, and other mental health problems. The review also identifies the factors that contribute to the negative impact of social media, including social comparison, cyberbullying, and FOMO.

Methods : A survey was administered to 200 university students to collect data on their social media use, mental health status, and perceived impact of social media on their mental health. The survey included questions on social media use, mental health status (measured using the DASS-21), and perceived impact of social media on their mental health. Data were analyzed using descriptive statistics and regression analysis.

Results : The results showed that social media use is positively associated with depression, anxiety, and stress. The study also found that social comparison, cyberbullying, and FOMO are significant predictors of mental health problems among young adults.

Discussion : The study’s findings suggest that social media use has a negative impact on the mental health of young adults. The study highlights the need for interventions that address the factors contributing to the negative impact of social media, such as social comparison, cyberbullying, and FOMO.

Conclusion : In conclusion, social media use has a significant impact on the mental health of young adults. The study’s findings underscore the need for interventions that promote healthy social media use and address the negative outcomes associated with social media use. Future research can explore the effectiveness of interventions aimed at reducing the negative impact of social media on mental health. Additionally, longitudinal studies can investigate the long-term effects of social media use on mental health.

Limitations : The study has some limitations, including the use of self-report measures and a cross-sectional design. The use of self-report measures may result in biased responses, and a cross-sectional design limits the ability to establish causality.

Implications: The study’s findings have implications for mental health professionals, educators, and policymakers. Mental health professionals can use the findings to develop interventions that address the negative impact of social media use on mental health. Educators can incorporate social media literacy into their curriculum to promote healthy social media use among young adults. Policymakers can use the findings to develop policies that protect young adults from the negative outcomes associated with social media use.

References :

• Twenge, J. M., & Campbell, W. K. (2019). Associations between screen time and lower psychological well-being among children and adolescents: Evidence from a population-based study. Preventive medicine reports, 15, 100918.
• Primack, B. A., Shensa, A., Escobar-Viera, C. G., Barrett, E. L., Sidani, J. E., Colditz, J. B., … & James, A. E. (2017). Use of multiple social media platforms and symptoms of depression and anxiety: A nationally-representative study among US young adults. Computers in Human Behavior, 69, 1-9.
• Van der Meer, T. G., & Verhoeven, J. W. (2017). Social media and its impact on academic performance of students. Journal of Information Technology Education: Research, 16, 383-398.

Appendix : The survey used in this study is provided below.

Social Media and Mental Health Survey

• How often do you use social media per day?
• Less than 30 minutes
• 30 minutes to 1 hour
• 1 to 2 hours
• 2 to 4 hours
• More than 4 hours
• Which social media platforms do you use?
• Others (Please specify)
• How often do you experience the following on social media?
• Social comparison (comparing yourself to others)
• Cyberbullying
• Fear of Missing Out (FOMO)
• Have you ever experienced any of the following mental health problems in the past month?
• Do you think social media use has a positive or negative impact on your mental health?
• Very positive
• Somewhat positive
• Somewhat negative
• Very negative
• In your opinion, which factors contribute to the negative impact of social media on mental health?
• Social comparison
• In your opinion, what interventions could be effective in reducing the negative impact of social media on mental health?
• Education on healthy social media use
• Counseling for mental health problems caused by social media
• Social media detox programs
• Regulation of social media use

Thank you for your participation!

Applications of Research Paper

Research papers have several applications in various fields, including:

• Advancing knowledge: Research papers contribute to the advancement of knowledge by generating new insights, theories, and findings that can inform future research and practice. They help to answer important questions, clarify existing knowledge, and identify areas that require further investigation.
• Informing policy: Research papers can inform policy decisions by providing evidence-based recommendations for policymakers. They can help to identify gaps in current policies, evaluate the effectiveness of interventions, and inform the development of new policies and regulations.
• Improving practice: Research papers can improve practice by providing evidence-based guidance for professionals in various fields, including medicine, education, business, and psychology. They can inform the development of best practices, guidelines, and standards of care that can improve outcomes for individuals and organizations.
• Educating students : Research papers are often used as teaching tools in universities and colleges to educate students about research methods, data analysis, and academic writing. They help students to develop critical thinking skills, research skills, and communication skills that are essential for success in many careers.
• Fostering collaboration: Research papers can foster collaboration among researchers, practitioners, and policymakers by providing a platform for sharing knowledge and ideas. They can facilitate interdisciplinary collaborations and partnerships that can lead to innovative solutions to complex problems.

When to Write Research Paper

Research papers are typically written when a person has completed a research project or when they have conducted a study and have obtained data or findings that they want to share with the academic or professional community. Research papers are usually written in academic settings, such as universities, but they can also be written in professional settings, such as research organizations, government agencies, or private companies.

Here are some common situations where a person might need to write a research paper:

• For academic purposes: Students in universities and colleges are often required to write research papers as part of their coursework, particularly in the social sciences, natural sciences, and humanities. Writing research papers helps students to develop research skills, critical thinking skills, and academic writing skills.
• For publication: Researchers often write research papers to publish their findings in academic journals or to present their work at academic conferences. Publishing research papers is an important way to disseminate research findings to the academic community and to establish oneself as an expert in a particular field.
• To inform policy or practice : Researchers may write research papers to inform policy decisions or to improve practice in various fields. Research findings can be used to inform the development of policies, guidelines, and best practices that can improve outcomes for individuals and organizations.
• To share new insights or ideas: Researchers may write research papers to share new insights or ideas with the academic or professional community. They may present new theories, propose new research methods, or challenge existing paradigms in their field.

Purpose of Research Paper

The purpose of a research paper is to present the results of a study or investigation in a clear, concise, and structured manner. Research papers are written to communicate new knowledge, ideas, or findings to a specific audience, such as researchers, scholars, practitioners, or policymakers. The primary purposes of a research paper are:

• To contribute to the body of knowledge : Research papers aim to add new knowledge or insights to a particular field or discipline. They do this by reporting the results of empirical studies, reviewing and synthesizing existing literature, proposing new theories, or providing new perspectives on a topic.
• To inform or persuade: Research papers are written to inform or persuade the reader about a particular issue, topic, or phenomenon. They present evidence and arguments to support their claims and seek to persuade the reader of the validity of their findings or recommendations.
• To advance the field: Research papers seek to advance the field or discipline by identifying gaps in knowledge, proposing new research questions or approaches, or challenging existing assumptions or paradigms. They aim to contribute to ongoing debates and discussions within a field and to stimulate further research and inquiry.
• To demonstrate research skills: Research papers demonstrate the author’s research skills, including their ability to design and conduct a study, collect and analyze data, and interpret and communicate findings. They also demonstrate the author’s ability to critically evaluate existing literature, synthesize information from multiple sources, and write in a clear and structured manner.

Characteristics of Research Paper

Research papers have several characteristics that distinguish them from other forms of academic or professional writing. Here are some common characteristics of research papers:

• Evidence-based: Research papers are based on empirical evidence, which is collected through rigorous research methods such as experiments, surveys, observations, or interviews. They rely on objective data and facts to support their claims and conclusions.
• Structured and organized: Research papers have a clear and logical structure, with sections such as introduction, literature review, methods, results, discussion, and conclusion. They are organized in a way that helps the reader to follow the argument and understand the findings.
• Formal and objective: Research papers are written in a formal and objective tone, with an emphasis on clarity, precision, and accuracy. They avoid subjective language or personal opinions and instead rely on objective data and analysis to support their arguments.
• Citations and references: Research papers include citations and references to acknowledge the sources of information and ideas used in the paper. They use a specific citation style, such as APA, MLA, or Chicago, to ensure consistency and accuracy.
• Peer-reviewed: Research papers are often peer-reviewed, which means they are evaluated by other experts in the field before they are published. Peer-review ensures that the research is of high quality, meets ethical standards, and contributes to the advancement of knowledge in the field.
• Objective and unbiased: Research papers strive to be objective and unbiased in their presentation of the findings. They avoid personal biases or preconceptions and instead rely on the data and analysis to draw conclusions.

Advantages of Research Paper

Research papers have many advantages, both for the individual researcher and for the broader academic and professional community. Here are some advantages of research papers:

• Contribution to knowledge: Research papers contribute to the body of knowledge in a particular field or discipline. They add new information, insights, and perspectives to existing literature and help advance the understanding of a particular phenomenon or issue.
• Opportunity for intellectual growth: Research papers provide an opportunity for intellectual growth for the researcher. They require critical thinking, problem-solving, and creativity, which can help develop the researcher’s skills and knowledge.
• Career advancement: Research papers can help advance the researcher’s career by demonstrating their expertise and contributions to the field. They can also lead to new research opportunities, collaborations, and funding.
• Academic recognition: Research papers can lead to academic recognition in the form of awards, grants, or invitations to speak at conferences or events. They can also contribute to the researcher’s reputation and standing in the field.
• Impact on policy and practice: Research papers can have a significant impact on policy and practice. They can inform policy decisions, guide practice, and lead to changes in laws, regulations, or procedures.
• Advancement of society: Research papers can contribute to the advancement of society by addressing important issues, identifying solutions to problems, and promoting social justice and equality.

Limitations of Research Paper

Research papers also have some limitations that should be considered when interpreting their findings or implications. Here are some common limitations of research papers:

• Limited generalizability: Research findings may not be generalizable to other populations, settings, or contexts. Studies often use specific samples or conditions that may not reflect the broader population or real-world situations.
• Potential for bias : Research papers may be biased due to factors such as sample selection, measurement errors, or researcher biases. It is important to evaluate the quality of the research design and methods used to ensure that the findings are valid and reliable.
• Ethical concerns: Research papers may raise ethical concerns, such as the use of vulnerable populations or invasive procedures. Researchers must adhere to ethical guidelines and obtain informed consent from participants to ensure that the research is conducted in a responsible and respectful manner.
• Limitations of methodology: Research papers may be limited by the methodology used to collect and analyze data. For example, certain research methods may not capture the complexity or nuance of a particular phenomenon, or may not be appropriate for certain research questions.
• Publication bias: Research papers may be subject to publication bias, where positive or significant findings are more likely to be published than negative or non-significant findings. This can skew the overall findings of a particular area of research.
• Time and resource constraints: Research papers may be limited by time and resource constraints, which can affect the quality and scope of the research. Researchers may not have access to certain data or resources, or may be unable to conduct long-term studies due to practical limitations.

About the author

Muhammad Hassan

Researcher, Academic Writer, Web developer

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Structure of a Research Paper: Tips to Improve Your Manuscript

You’ve spent months or years conducting your academic research. Now it’s time to write your journal article. For some, this can become a daunting task because writing is not their forte. It might become difficult to even start writing. However, once you organize your thoughts and begin writing them down, the overall task will become easier.

We provide some helpful tips for you here.

Organize Your Thoughts

Perhaps one of the most important tasks before you even begin to write is to get organized. By this point, your data is compiled and analyzed. You most likely also have many pages of “notes”. These must also be organized. Fortunately, this is much easier to do than in the past with hand-written notes. Presuming that these tasks are completed, what’s next?

Related: Ready with your title and looking forward to manuscript submission ? Check these journal selection guidelines  now!

When suggesting that you organize your thoughts, we mean to take a look at what you have compiled. Ask yourself what you are trying to convey to the reader. What is the most important message from your research? How will your results affect others? Is more research necessary?

Write your answers down and keep them where you can see them while writing. This will help you focus on your goals.

Aim for Clarity

Your paper should be presented as clearly as possible. You want your readers to understand your research. You also do not want them to stop reading because the text is too technical.

Keep in mind that your published research will be available in academic journals all over the world. This means that people of different languages will read it. Moreover, even with scientists, this could present a language barrier. According to a recent article , always remember the following points as you write:

• Clarity : Cleary define terms; avoid nonrelevant information.
• Simplicity : Keep sentence structure simple and direct.
• Accuracy : Represent all data and illustrations accurately.

For example, consider the following sentence:

“Chemical x had an effect on metabolism.”

This is an ambiguous statement. It does not tell the reader much. State the results instead:

“Chemical x increased fat metabolism by 20 percent.”

All scientific research also provide significance of findings, usually presented as defined “P” values. Be sure to explain these findings using descriptive terms. For example, rather than using the words “ significant effect ,” use a more descriptive term, such as “ significant increase .”

For more tips, please also see “Tips and Techniques for Scientific Writing”. In addition, it is very important to have your paper edited by a native English speaking professional editor. There are many editing services available for academic manuscripts and publication support services.

Research Paper Structure

With the above in mind, you can now focus on structure. Scientific papers are organized into specific sections and each has a goal. We have listed them here.

• Your title is the most important part of your paper. It draws the reader in and tells them what you are presenting. Moreover, if you think about the titles of papers that you might browse in a day and which papers you actually read, you’ll agree.
• The title should be clear and interesting otherwise the reader will not continue reading.
• Authors’ names and affiliations are on the title page.
• The abstract is a summary of your research. It is nearly as important as the title because the reader will be able to quickly read through it.
• Most journals, the abstract can become divided into very short sections to guide the reader through the summaries.
• Keep the sentences short and focused.
• Avoid acronyms and citations.
• Include background information on the subject and your objectives here.
• Describe the materials used and include the names and locations of the manufacturers.
• For any animal studies, include where you obtained the animals and a statement of humane treatment.
• Clearly and succinctly explain your methods so that it can be duplicated.
• Criteria for inclusion and exclusion in the study and statistical analyses should be included.
• Discuss your findings here.
• Be careful to not make definitive statements .
• Your results suggest that something is or is not true.
• This is true even when your results prove your hypothesis.
• Discuss what your results mean in this section.
• Discuss any study limitations. Suggest additional studies.
• Acknowledge all contributors.
• All citations in the text must have a corresponding reference.
• Check your author guidelines for format protocols.
• In most cases, your tables and figures appear at the end of your paper or in a separate file.
• The titles (legends) usually become listed after the reference section.
• Be sure that you define each acronym and abbreviation in each table and figure.

Helpful Rules

In their article entitled, “Ten simple rules for structuring papers,” in PLOS Computational Biology , authors Mensh and Kording provided 10 helpful tips as follows:

• Focus on a central contribution.
• Write for those who do not know your work.
• Use the “context-content-conclusion” approach.
• Avoid superfluous information and use parallel structures.
• Summarize your research in the abstract.
• Explain the importance of your research in the introduction.
• Explain your results in a logical sequence and support them with figures and tables.
• Discuss any data gaps and limitations.
• Allocate your time for the most important sections.
• Get feedback from colleagues.

Some of these rules have been briefly discussed above; however, the study done by the authors does provide detailed explanations on all of them.

Helpful Sites

Visit the following links for more helpful information:

• “ Some writing tips for scientific papers ”
• “ How to Structure Your Dissertation ”
• “ Conciseness in Academic Writing: How to Prune Sentences ”
• “ How to Optimize Sentence Length in Academic Writing ”

So, do you follow any additional tips when structuring your research paper ? Share them with us in the comments below!

Thanks for sharing this post. Great information provided. I really appreciate your writing. I like the way you put across your ideas.

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How To Write A Research Paper

Step-By-Step Tutorial With Examples + FREE Template

By: Derek Jansen (MBA) | Expert Reviewer: Dr Eunice Rautenbach | March 2024

For many students, crafting a strong research paper from scratch can feel like a daunting task – and rightly so! In this post, we’ll unpack what a research paper is, what it needs to do , and how to write one – in three easy steps. 🙂 

Overview: Writing A Research Paper

What (exactly) is a research paper.

• How to write a research paper
• Stage 1 : Topic & literature search
• Stage 2 : Structure & outline
• Stage 3 : Iterative writing
• Key takeaways

Let’s start by asking the most important question, “ What is a research paper? ”.

Simply put, a research paper is a scholarly written work where the writer (that’s you!) answers a specific question (this is called a research question ) through evidence-based arguments . Evidence-based is the keyword here. In other words, a research paper is different from an essay or other writing assignments that draw from the writer’s personal opinions or experiences. With a research paper, it’s all about building your arguments based on evidence (we’ll talk more about that evidence a little later).

Now, it’s worth noting that there are many different types of research papers , including analytical papers (the type I just described), argumentative papers, and interpretative papers. Here, we’ll focus on analytical papers , as these are some of the most common – but if you’re keen to learn about other types of research papers, be sure to check out the rest of the blog .

With that basic foundation laid, let’s get down to business and look at how to write a research paper .

Overview: The 3-Stage Process

While there are, of course, many potential approaches you can take to write a research paper, there are typically three stages to the writing process. So, in this tutorial, we’ll present a straightforward three-step process that we use when working with students at Grad Coach.

These three steps are:

• Finding a research topic and reviewing the existing literature
• Developing a provisional structure and outline for your paper, and
• Writing up your initial draft and then refining it iteratively

Let’s dig into each of these.

Need a helping hand?

Step 1: Find a topic and review the literature

As we mentioned earlier, in a research paper, you, as the researcher, will try to answer a question . More specifically, that’s called a research question , and it sets the direction of your entire paper. What’s important to understand though is that you’ll need to answer that research question with the help of high-quality sources – for example, journal articles, government reports, case studies, and so on. We’ll circle back to this in a minute.

The first stage of the research process is deciding on what your research question will be and then reviewing the existing literature (in other words, past studies and papers) to see what they say about that specific research question. In some cases, your professor may provide you with a predetermined research question (or set of questions). However, in many cases, you’ll need to find your own research question within a certain topic area.

Finding a strong research question hinges on identifying a meaningful research gap – in other words, an area that’s lacking in existing research. There’s a lot to unpack here, so if you wanna learn more, check out the plain-language explainer video below.

Once you’ve figured out which question (or questions) you’ll attempt to answer in your research paper, you’ll need to do a deep dive into the existing literature – this is called a “ literature search ”. Again, there are many ways to go about this, but your most likely starting point will be Google Scholar .

If you’re new to Google Scholar, think of it as Google for the academic world. You can start by simply entering a few different keywords that are relevant to your research question and it will then present a host of articles for you to review. What you want to pay close attention to here is the number of citations for each paper – the more citations a paper has, the more credible it is (generally speaking – there are some exceptions, of course).

Ideally, what you’re looking for are well-cited papers that are highly relevant to your topic. That said, keep in mind that citations are a cumulative metric , so older papers will often have more citations than newer papers – just because they’ve been around for longer. So, don’t fixate on this metric in isolation – relevance and recency are also very important.

Beyond Google Scholar, you’ll also definitely want to check out academic databases and aggregators such as Science Direct, PubMed, JStor and so on. These will often overlap with the results that you find in Google Scholar, but they can also reveal some hidden gems – so, be sure to check them out.

Once you’ve worked your way through all the literature, you’ll want to catalogue all this information in some sort of spreadsheet so that you can easily recall who said what, when and within what context. If you’d like, we’ve got a free literature spreadsheet that helps you do exactly that.

Step 2: Develop a structure and outline

With your research question pinned down and your literature digested and catalogued, it’s time to move on to planning your actual research paper .

It might sound obvious, but it’s really important to have some sort of rough outline in place before you start writing your paper. So often, we see students eagerly rushing into the writing phase, only to land up with a disjointed research paper that rambles on in multiple

Now, the secret here is to not get caught up in the fine details . Realistically, all you need at this stage is a bullet-point list that describes (in broad strokes) what you’ll discuss and in what order. It’s also useful to remember that you’re not glued to this outline – in all likelihood, you’ll chop and change some sections once you start writing, and that’s perfectly okay. What’s important is that you have some sort of roadmap in place from the start.

At this stage you might be wondering, “ But how should I structure my research paper? ”. Well, there’s no one-size-fits-all solution here, but in general, a research paper will consist of a few relatively standardised components:

• Introduction
• Literature review
• Methodology

Let’s take a look at each of these.

First up is the introduction section . As the name suggests, the purpose of the introduction is to set the scene for your research paper. There are usually (at least) four ingredients that go into this section – these are the background to the topic, the research problem and resultant research question , and the justification or rationale. If you’re interested, the video below unpacks the introduction section in more detail. 

The next section of your research paper will typically be your literature review . Remember all that literature you worked through earlier? Well, this is where you’ll present your interpretation of all that content . You’ll do this by writing about recent trends, developments, and arguments within the literature – but more specifically, those that are relevant to your research question . The literature review can oftentimes seem a little daunting, even to seasoned researchers, so be sure to check out our extensive collection of literature review content here .

With the introduction and lit review out of the way, the next section of your paper is the research methodology . In a nutshell, the methodology section should describe to your reader what you did (beyond just reviewing the existing literature) to answer your research question. For example, what data did you collect, how did you collect that data, how did you analyse that data and so on? For each choice, you’ll also need to justify why you chose to do it that way, and what the strengths and weaknesses of your approach were.

Now, it’s worth mentioning that for some research papers, this aspect of the project may be a lot simpler . For example, you may only need to draw on secondary sources (in other words, existing data sets). In some cases, you may just be asked to draw your conclusions from the literature search itself (in other words, there may be no data analysis at all). But, if you are required to collect and analyse data, you’ll need to pay a lot of attention to the methodology section. The video below provides an example of what the methodology section might look like.

By this stage of your paper, you will have explained what your research question is, what the existing literature has to say about that question, and how you analysed additional data to try to answer your question. So, the natural next step is to present your analysis of that data . This section is usually called the “results” or “analysis” section and this is where you’ll showcase your findings.

Depending on your school’s requirements, you may need to present and interpret the data in one section – or you might split the presentation and the interpretation into two sections. In the latter case, your “results” section will just describe the data, and the “discussion” is where you’ll interpret that data and explicitly link your analysis back to your research question. If you’re not sure which approach to take, check in with your professor or take a look at past papers to see what the norms are for your programme.

Alright – once you’ve presented and discussed your results, it’s time to wrap it up . This usually takes the form of the “ conclusion ” section. In the conclusion, you’ll need to highlight the key takeaways from your study and close the loop by explicitly answering your research question. Again, the exact requirements here will vary depending on your programme (and you may not even need a conclusion section at all) – so be sure to check with your professor if you’re unsure.

Step 3: Write and refine

Finally, it’s time to get writing. All too often though, students hit a brick wall right about here… So, how do you avoid this happening to you?

Well, there’s a lot to be said when it comes to writing a research paper (or any sort of academic piece), but we’ll share three practical tips to help you get started.

First and foremost , it’s essential to approach your writing as an iterative process. In other words, you need to start with a really messy first draft and then polish it over multiple rounds of editing. Don’t waste your time trying to write a perfect research paper in one go. Instead, take the pressure off yourself by adopting an iterative approach.

Secondly , it’s important to always lean towards critical writing , rather than descriptive writing. What does this mean? Well, at the simplest level, descriptive writing focuses on the “ what ”, while critical writing digs into the “ so what ” – in other words, the implications. If you’re not familiar with these two types of writing, don’t worry! You can find a plain-language explanation here.

Last but not least, you’ll need to get your referencing right. Specifically, you’ll need to provide credible, correctly formatted citations for the statements you make. We see students making referencing mistakes all the time and it costs them dearly. The good news is that you can easily avoid this by using a simple reference manager . If you don’t have one, check out our video about Mendeley, an easy (and free) reference management tool that you can start using today.

Recap: Key Takeaways

We’ve covered a lot of ground here. To recap, the three steps to writing a high-quality research paper are:

• To choose a research question and review the literature
• To plan your paper structure and draft an outline
• To take an iterative approach to writing, focusing on critical writing and strong referencing

Remember, this is just a b ig-picture overview of the research paper development process and there’s a lot more nuance to unpack. So, be sure to grab a copy of our free research paper template to learn more about how to write a research paper.

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Structure of a Research Paper

Structure of a Research Paper: IMRaD Format

I. The Title Page

• Title: Tells the reader what to expect in the paper.
• Author(s): Most papers are written by one or two primary authors. The remaining authors have reviewed the work and/or aided in study design or data analysis (International Committee of Medical Editors, 1997). Check the Instructions to Authors for the target journal for specifics about authorship.
• Keywords [according to the journal]
• Corresponding Author: Full name and affiliation for the primary contact author for persons who have questions about the research.
• Financial & Equipment Support [if needed]: Specific information about organizations, agencies, or companies that supported the research.
• Conflicts of Interest [if needed]: List and explain any conflicts of interest.

II. Abstract: “Structured abstract” has become the standard for research papers (introduction, objective, methods, results and conclusions), while reviews, case reports and other articles have non-structured abstracts. The abstract should be a summary/synopsis of the paper.

III. Introduction: The “why did you do the study”; setting the scene or laying the foundation or background for the paper.

IV. Methods: The “how did you do the study.” Describe the --

• Context and setting of the study
• Specify the study design
• Population (patients, etc. if applicable)
• Sampling strategy
• Intervention (if applicable)
• Identify the main study variables
• Data collection instruments and procedures
• Outline analysis methods

V. Results: The “what did you find” --

• Report on data collection and/or recruitment
• Participants (demographic, clinical condition, etc.)
• Present key findings with respect to the central research question
• Secondary findings (secondary outcomes, subgroup analyses, etc.)

VI. Discussion: Place for interpreting the results

• Main findings of the study
• Discuss the main results with reference to previous research
• Policy and practice implications of the results
• Strengths and limitations of the study

VII. Conclusions: [occasionally optional or not required]. Do not reiterate the data or discussion. Can state hunches, inferences or speculations. Offer perspectives for future work.

VIII. Acknowledgements: Names people who contributed to the work, but did not contribute sufficiently to earn authorship. You must have permission from any individuals mentioned in the acknowledgements sections. 

IX. References:  Complete citations for any articles or other materials referenced in the text of the article.

• IMRD Cheatsheet (Carnegie Mellon) pdf.
• Adewasi, D. (2021 June 14).  What Is IMRaD? IMRaD Format in Simple Terms! . Scientific-editing.info. 
• Nair, P.K.R., Nair, V.D. (2014). Organization of a Research Paper: The IMRAD Format. In: Scientific Writing and Communication in Agriculture and Natural Resources. Springer, Cham. https://doi.org/10.1007/978-3-319-03101-9_2
• Sollaci, L. B., & Pereira, M. G. (2004). The introduction, methods, results, and discussion (IMRAD) structure: a fifty-year survey.   Journal of the Medical Library Association : JMLA ,  92 (3), 364–367.
• Cuschieri, S., Grech, V., & Savona-Ventura, C. (2019). WASP (Write a Scientific Paper): Structuring a scientific paper.   Early human development ,  128 , 114–117. https://doi.org/10.1016/j.earlhumdev.2018.09.011

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Article Contents

Primacy of the research question, structure of the paper, writing a research article: advice to beginners.

• Article contents
• Figures & tables
• Supplementary Data

Thomas V. Perneger, Patricia M. Hudelson, Writing a research article: advice to beginners, International Journal for Quality in Health Care , Volume 16, Issue 3, June 2004, Pages 191–192, https://doi.org/10.1093/intqhc/mzh053

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Writing research papers does not come naturally to most of us. The typical research paper is a highly codified rhetorical form [ 1 , 2 ]. Knowledge of the rules—some explicit, others implied—goes a long way toward writing a paper that will get accepted in a peer-reviewed journal.

A good research paper addresses a specific research question. The research question—or study objective or main research hypothesis—is the central organizing principle of the paper. Whatever relates to the research question belongs in the paper; the rest doesn’t. This is perhaps obvious when the paper reports on a well planned research project. However, in applied domains such as quality improvement, some papers are written based on projects that were undertaken for operational reasons, and not with the primary aim of producing new knowledge. In such cases, authors should define the main research question a posteriori and design the paper around it.

Generally, only one main research question should be addressed in a paper (secondary but related questions are allowed). If a project allows you to explore several distinct research questions, write several papers. For instance, if you measured the impact of obtaining written consent on patient satisfaction at a specialized clinic using a newly developed questionnaire, you may want to write one paper on the questionnaire development and validation, and another on the impact of the intervention. The idea is not to split results into ‘least publishable units’, a practice that is rightly decried, but rather into ‘optimally publishable units’.

What is a good research question? The key attributes are: (i) specificity; (ii) originality or novelty; and (iii) general relevance to a broad scientific community. The research question should be precise and not merely identify a general area of inquiry. It can often (but not always) be expressed in terms of a possible association between X and Y in a population Z, for example ‘we examined whether providing patients about to be discharged from the hospital with written information about their medications would improve their compliance with the treatment 1 month later’. A study does not necessarily have to break completely new ground, but it should extend previous knowledge in a useful way, or alternatively refute existing knowledge. Finally, the question should be of interest to others who work in the same scientific area. The latter requirement is more challenging for those who work in applied science than for basic scientists. While it may safely be assumed that the human genome is the same worldwide, whether the results of a local quality improvement project have wider relevance requires careful consideration and argument.

Once the research question is clearly defined, writing the paper becomes considerably easier. The paper will ask the question, then answer it. The key to successful scientific writing is getting the structure of the paper right. The basic structure of a typical research paper is the sequence of Introduction, Methods, Results, and Discussion (sometimes abbreviated as IMRAD). Each section addresses a different objective. The authors state: (i) the problem they intend to address—in other terms, the research question—in the Introduction; (ii) what they did to answer the question in the Methods section; (iii) what they observed in the Results section; and (iv) what they think the results mean in the Discussion.

In turn, each basic section addresses several topics, and may be divided into subsections (Table 1 ). In the Introduction, the authors should explain the rationale and background to the study. What is the research question, and why is it important to ask it? While it is neither necessary nor desirable to provide a full-blown review of the literature as a prelude to the study, it is helpful to situate the study within some larger field of enquiry. The research question should always be spelled out, and not merely left for the reader to guess.

Typical structure of a research paper

The Methods section should provide the readers with sufficient detail about the study methods to be able to reproduce the study if so desired. Thus, this section should be specific, concrete, technical, and fairly detailed. The study setting, the sampling strategy used, instruments, data collection methods, and analysis strategies should be described. In the case of qualitative research studies, it is also useful to tell the reader which research tradition the study utilizes and to link the choice of methodological strategies with the research goals [ 3 ].

The Results section is typically fairly straightforward and factual. All results that relate to the research question should be given in detail, including simple counts and percentages. Resist the temptation to demonstrate analytic ability and the richness of the dataset by providing numerous tables of non-essential results.

The Discussion section allows the most freedom. This is why the Discussion is the most difficult to write, and is often the weakest part of a paper. Structured Discussion sections have been proposed by some journal editors [ 4 ]. While strict adherence to such rules may not be necessary, following a plan such as that proposed in Table 1 may help the novice writer stay on track.

References should be used wisely. Key assertions should be referenced, as well as the methods and instruments used. However, unless the paper is a comprehensive review of a topic, there is no need to be exhaustive. Also, references to unpublished work, to documents in the grey literature (technical reports), or to any source that the reader will have difficulty finding or understanding should be avoided.

Having the structure of the paper in place is a good start. However, there are many details that have to be attended to while writing. An obvious recommendation is to read, and follow, the instructions to authors published by the journal (typically found on the journal’s website). Another concerns non-native writers of English: do have a native speaker edit the manuscript. A paper usually goes through several drafts before it is submitted. When revising a paper, it is useful to keep an eye out for the most common mistakes (Table 2 ). If you avoid all those, your paper should be in good shape.

Common mistakes seen in manuscripts submitted to this journal

Huth EJ . How to Write and Publish Papers in the Medical Sciences , 2nd edition. Baltimore, MD: Williams & Wilkins, 1990 .

Browner WS . Publishing and Presenting Clinical Research . Baltimore, MD: Lippincott, Williams & Wilkins, 1999 .

Devers KJ , Frankel RM. Getting qualitative research published. Educ Health 2001 ; 14 : 109 –117.

Docherty M , Smith R. The case for structuring the discussion of scientific papers. Br Med J 1999 ; 318 : 1224 –1225.

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• CAREER BRIEF
• 08 May 2019

Toolkit: How to write a great paper

A clear format will ensure that your research paper is understood by your readers. Follow:

1. Context — your introduction

2. Content — your results

3. Conclusion — your discussion

Plan your paper carefully and decide where each point will sit within the framework before you begin writing.

Collection: Careers toolkit

Straightforward writing

Scientific writing should always aim to be A, B and C: Accurate, Brief, and Clear. Never choose a long word when a short one will do. Use simple language to communicate your results. Always aim to distill your message down into the simplest sentence possible.

Choose a title

A carefully conceived title will communicate the single core message of your research paper. It should be D, E, F: Declarative, Engaging and Focused.

Conclusions

Add a sentence or two at the end of your concluding statement that sets out your plans for further research. What is next for you or others working in your field?

Find out more

See additional information .

doi: https://doi.org/10.1038/d41586-019-01362-9

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Online Guide to Writing and Research

The research process, explore more of umgc.

• Online Guide to Writing

Structuring the Research Paper

Formal research structure.

These are the primary purposes for formal research:

enter the discourse, or conversation, of other writers and scholars in your field

learn how others in your field use primary and secondary resources

find and understand raw data and information

For the formal academic research assignment, consider an organizational pattern typically used for primary academic research.  The pattern includes the following: introduction, methods, results, discussion, and conclusions/recommendations.

Usually, research papers flow from the general to the specific and back to the general in their organization. The introduction uses a general-to-specific movement in its organization, establishing the thesis and setting the context for the conversation. The methods and results sections are more detailed and specific, providing support for the generalizations made in the introduction. The discussion section moves toward an increasingly more general discussion of the subject, leading to the conclusions and recommendations, which then generalize the conversation again.

Sections of a Formal Structure

The introduction section.

Many students will find that writing a structured  introduction  gets them started and gives them the focus needed to significantly improve their entire paper. 

Introductions usually have three parts:

presentation of the problem statement, the topic, or the research inquiry

purpose and focus of your paper

summary or overview of the writer’s position or arguments

In the first part of the introduction—the presentation of the problem or the research inquiry—state the problem or express it so that the question is implied. Then, sketch the background on the problem and review the literature on it to give your readers a context that shows them how your research inquiry fits into the conversation currently ongoing in your subject area. 

In the second part of the introduction, state your purpose and focus. Here, you may even present your actual thesis. Sometimes your purpose statement can take the place of the thesis by letting your reader know your intentions. 

The third part of the introduction, the summary or overview of the paper, briefly leads readers through the discussion, forecasting the main ideas and giving readers a blueprint for the paper. 

The following example provides a blueprint for a well-organized introduction.

Example of an Introduction

Entrepreneurial Marketing: The Critical Difference

In an article in the Harvard Business Review, John A. Welsh and Jerry F. White remind us that “a small business is not a little big business.” An entrepreneur is not a multinational conglomerate but a profit-seeking individual. To survive, he must have a different outlook and must apply different principles to his endeavors than does the president of a large or even medium-sized corporation. Not only does the scale of small and big businesses differ, but small businesses also suffer from what the Harvard Business Review article calls “resource poverty.” This is a problem and opportunity that requires an entirely different approach to marketing. Where large ad budgets are not necessary or feasible, where expensive ad production squanders limited capital, where every marketing dollar must do the work of two dollars, if not five dollars or even ten, where a person’s company, capital, and material well-being are all on the line—that is, where guerrilla marketing can save the day and secure the bottom line (Levinson, 1984, p. 9).

By reviewing the introductions to research articles in the discipline in which you are writing your research paper, you can get an idea of what is considered the norm for that discipline. Study several of these before you begin your paper so that you know what may be expected. If you are unsure of the kind of introduction your paper needs, ask your professor for more information.  The introduction is normally written in present tense.

THE METHODS SECTION

The methods section of your research paper should describe in detail what methodology and special materials if any, you used to think through or perform your research. You should include any materials you used or designed for yourself, such as questionnaires or interview questions, to generate data or information for your research paper. You want to include any methodologies that are specific to your particular field of study, such as lab procedures for a lab experiment or data-gathering instruments for field research. The methods section is usually written in the past tense.

THE RESULTS SECTION

How you present the results of your research depends on what kind of research you did, your subject matter, and your readers’ expectations. 

Quantitative information —data that can be measured—can be presented systematically and economically in tables, charts, and graphs. Quantitative information includes quantities and comparisons of sets of data. 

Qualitative information , which includes brief descriptions, explanations, or instructions, can also be presented in prose tables. This kind of descriptive or explanatory information, however, is often presented in essay-like prose or even lists.

There are specific conventions for creating tables, charts, and graphs and organizing the information they contain. In general, you should use them only when you are sure they will enlighten your readers rather than confuse them. In the accompanying explanation and discussion, always refer to the graphic by number and explain specifically what you are referring to; you can also provide a caption for the graphic. The rule of thumb for presenting a graphic is first to introduce it by name, show it, and then interpret it. The results section is usually written in the past tense.

THE DISCUSSION SECTION

Your discussion section should generalize what you have learned from your research. One way to generalize is to explain the consequences or meaning of your results and then make your points that support and refer back to the statements you made in your introduction. Your discussion should be organized so that it relates directly to your thesis. You want to avoid introducing new ideas here or discussing tangential issues not directly related to the exploration and discovery of your thesis. The discussion section, along with the introduction, is usually written in the present tense.

THE CONCLUSIONS AND RECOMMENDATIONS SECTION

Your conclusion ties your research to your thesis, binding together all the main ideas in your thinking and writing. By presenting the logical outcome of your research and thinking, your conclusion answers your research inquiry for your reader. Your conclusions should relate directly to the ideas presented in your introduction section and should not present any new ideas.

You may be asked to present your recommendations separately in your research assignment. If so, you will want to add some elements to your conclusion section. For example, you may be asked to recommend a course of action, make a prediction, propose a solution to a problem, offer a judgment, or speculate on the implications and consequences of your ideas. The conclusions and recommendations section is usually written in the present tense.

Key Takeaways

• For the formal academic research assignment, consider an organizational pattern typically used for primary academic research. 
•  The pattern includes the following: introduction, methods, results, discussion, and conclusions/recommendations.

Mailing Address: 3501 University Blvd. East, Adelphi, MD 20783 This work is licensed under a  Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License . © 2022 UMGC. All links to external sites were verified at the time of publication. UMGC is not responsible for the validity or integrity of information located at external sites.

Table of Contents: Online Guide to Writing

Chapter 1: College Writing

How Does College Writing Differ from Workplace Writing?

What Is College Writing?

Why So Much Emphasis on Writing?

Chapter 2: The Writing Process

Doing Exploratory Research

Getting from Notes to Your Draft

Introduction

Prewriting - Techniques to Get Started - Mining Your Intuition

Prewriting: Targeting Your Audience

Prewriting: Techniques to Get Started

Prewriting: Understanding Your Assignment

Rewriting: Being Your Own Critic

Rewriting: Creating a Revision Strategy

Rewriting: Getting Feedback

Rewriting: The Final Draft

Techniques to Get Started - Outlining

Techniques to Get Started - Using Systematic Techniques

Thesis Statement and Controlling Idea

Writing: Getting from Notes to Your Draft - Freewriting

Writing: Getting from Notes to Your Draft - Summarizing Your Ideas

Writing: Outlining What You Will Write

Chapter 3: Thinking Strategies

A Word About Style, Voice, and Tone

A Word About Style, Voice, and Tone: Style Through Vocabulary and Diction

Critical Strategies and Writing

Critical Strategies and Writing: Analysis

Critical Strategies and Writing: Evaluation

Critical Strategies and Writing: Persuasion

Critical Strategies and Writing: Synthesis

Developing a Paper Using Strategies

Kinds of Assignments You Will Write

Patterns for Presenting Information

Patterns for Presenting Information: Critiques

Patterns for Presenting Information: Discussing Raw Data

Patterns for Presenting Information: General-to-Specific Pattern

Patterns for Presenting Information: Problem-Cause-Solution Pattern

Patterns for Presenting Information: Specific-to-General Pattern

Patterns for Presenting Information: Summaries and Abstracts

Supporting with Research and Examples

Writing Essay Examinations

Writing Essay Examinations: Make Your Answer Relevant and Complete

Writing Essay Examinations: Organize Thinking Before Writing

Writing Essay Examinations: Read and Understand the Question

Chapter 4: The Research Process

Planning and Writing a Research Paper

Planning and Writing a Research Paper: Ask a Research Question

Planning and Writing a Research Paper: Cite Sources

Planning and Writing a Research Paper: Collect Evidence

Planning and Writing a Research Paper: Decide Your Point of View, or Role, for Your Research

Planning and Writing a Research Paper: Draw Conclusions

Planning and Writing a Research Paper: Find a Topic and Get an Overview

Planning and Writing a Research Paper: Manage Your Resources

Planning and Writing a Research Paper: Outline

Planning and Writing a Research Paper: Survey the Literature

Planning and Writing a Research Paper: Work Your Sources into Your Research Writing

Research Resources: Where Are Research Resources Found? - Human Resources

Research Resources: What Are Research Resources?

Research Resources: Where Are Research Resources Found?

Research Resources: Where Are Research Resources Found? - Electronic Resources

Research Resources: Where Are Research Resources Found? - Print Resources

Structuring the Research Paper: Formal Research Structure

Structuring the Research Paper: Informal Research Structure

The Nature of Research

The Research Assignment: How Should Research Sources Be Evaluated?

The Research Assignment: When Is Research Needed?

The Research Assignment: Why Perform Research?

Chapter 5: Academic Integrity

Academic Integrity

Giving Credit to Sources

Giving Credit to Sources: Copyright Laws

Giving Credit to Sources: Documentation

Giving Credit to Sources: Style Guides

Integrating Sources

Practicing Academic Integrity

Practicing Academic Integrity: Keeping Accurate Records

Practicing Academic Integrity: Managing Source Material

Practicing Academic Integrity: Managing Source Material - Paraphrasing Your Source

Practicing Academic Integrity: Managing Source Material - Quoting Your Source

Practicing Academic Integrity: Managing Source Material - Summarizing Your Sources

Types of Documentation

Types of Documentation: Bibliographies and Source Lists

Types of Documentation: Citing World Wide Web Sources

Types of Documentation: In-Text or Parenthetical Citations

Types of Documentation: In-Text or Parenthetical Citations - APA Style

Types of Documentation: In-Text or Parenthetical Citations - CSE/CBE Style

Types of Documentation: In-Text or Parenthetical Citations - Chicago Style

Types of Documentation: In-Text or Parenthetical Citations - MLA Style

Types of Documentation: Note Citations

Chapter 6: Using Library Resources

Finding Library Resources

Chapter 7: Assessing Your Writing

How Is Writing Graded?

How Is Writing Graded?: A General Assessment Tool

The Draft Stage

The Draft Stage: The First Draft

The Draft Stage: The Revision Process and the Final Draft

The Draft Stage: Using Feedback

The Research Stage

Using Assessment to Improve Your Writing

Chapter 8: Other Frequently Assigned Papers

Reviews and Reaction Papers: Article and Book Reviews

Reviews and Reaction Papers: Reaction Papers

Writing Arguments

Writing Arguments: Adapting the Argument Structure

Writing Arguments: Purposes of Argument

Writing Arguments: References to Consult for Writing Arguments

Writing Arguments: Steps to Writing an Argument - Anticipate Active Opposition

Writing Arguments: Steps to Writing an Argument - Determine Your Organization

Writing Arguments: Steps to Writing an Argument - Develop Your Argument

Writing Arguments: Steps to Writing an Argument - Introduce Your Argument

Writing Arguments: Steps to Writing an Argument - State Your Thesis or Proposition

Writing Arguments: Steps to Writing an Argument - Write Your Conclusion

Writing Arguments: Types of Argument

Appendix A: Books to Help Improve Your Writing

Dictionaries

General Style Manuals

Researching on the Internet

Special Style Manuals

Writing Handbooks

Appendix B: Collaborative Writing and Peer Reviewing

Collaborative Writing: Assignments to Accompany the Group Project

Collaborative Writing: Informal Progress Report

Collaborative Writing: Issues to Resolve

Collaborative Writing: Methodology

Collaborative Writing: Peer Evaluation

Collaborative Writing: Tasks of Collaborative Writing Group Members

Collaborative Writing: Writing Plan

General Introduction

Peer Reviewing

Appendix C: Developing an Improvement Plan

Working with Your Instructor’s Comments and Grades

Appendix D: Writing Plan and Project Schedule

Devising a Writing Project Plan and Schedule

Reviewing Your Plan with Others

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Writing Research Papers

• Research Paper Structure

Whether you are writing a B.S. Degree Research Paper or completing a research report for a Psychology course, it is highly likely that you will need to organize your research paper in accordance with American Psychological Association (APA) guidelines.  Here we discuss the structure of research papers according to APA style.

Major Sections of a Research Paper in APA Style

A complete research paper in APA style that is reporting on experimental research will typically contain a Title page, Abstract, Introduction, Methods, Results, Discussion, and References sections. 1  Many will also contain Figures and Tables and some will have an Appendix or Appendices.  These sections are detailed as follows (for a more in-depth guide, please refer to " How to Write a Research Paper in APA Style ”, a comprehensive guide developed by Prof. Emma Geller). 2

What is this paper called and who wrote it? – the first page of the paper; this includes the name of the paper, a “running head”, authors, and institutional affiliation of the authors.  The institutional affiliation is usually listed in an Author Note that is placed towards the bottom of the title page.  In some cases, the Author Note also contains an acknowledgment of any funding support and of any individuals that assisted with the research project.

One-paragraph summary of the entire study – typically no more than 250 words in length (and in many cases it is well shorter than that), the Abstract provides an overview of the study.

Introduction

What is the topic and why is it worth studying? – the first major section of text in the paper, the Introduction commonly describes the topic under investigation, summarizes or discusses relevant prior research (for related details, please see the Writing Literature Reviews section of this website), identifies unresolved issues that the current research will address, and provides an overview of the research that is to be described in greater detail in the sections to follow.

What did you do? – a section which details how the research was performed.  It typically features a description of the participants/subjects that were involved, the study design, the materials that were used, and the study procedure.  If there were multiple experiments, then each experiment may require a separate Methods section.  A rule of thumb is that the Methods section should be sufficiently detailed for another researcher to duplicate your research.

What did you find? – a section which describes the data that was collected and the results of any statistical tests that were performed.  It may also be prefaced by a description of the analysis procedure that was used. If there were multiple experiments, then each experiment may require a separate Results section.

What is the significance of your results? – the final major section of text in the paper.  The Discussion commonly features a summary of the results that were obtained in the study, describes how those results address the topic under investigation and/or the issues that the research was designed to address, and may expand upon the implications of those findings.  Limitations and directions for future research are also commonly addressed.

List of articles and any books cited – an alphabetized list of the sources that are cited in the paper (by last name of the first author of each source).  Each reference should follow specific APA guidelines regarding author names, dates, article titles, journal titles, journal volume numbers, page numbers, book publishers, publisher locations, websites, and so on (for more information, please see the Citing References in APA Style page of this website).

Tables and Figures

Graphs and data (optional in some cases) – depending on the type of research being performed, there may be Tables and/or Figures (however, in some cases, there may be neither).  In APA style, each Table and each Figure is placed on a separate page and all Tables and Figures are included after the References.   Tables are included first, followed by Figures.   However, for some journals and undergraduate research papers (such as the B.S. Research Paper or Honors Thesis), Tables and Figures may be embedded in the text (depending on the instructor’s or editor’s policies; for more details, see "Deviations from APA Style" below).

Supplementary information (optional) – in some cases, additional information that is not critical to understanding the research paper, such as a list of experiment stimuli, details of a secondary analysis, or programming code, is provided.  This is often placed in an Appendix.

Variations of Research Papers in APA Style

Although the major sections described above are common to most research papers written in APA style, there are variations on that pattern.  These variations include: 

• Literature reviews – when a paper is reviewing prior published research and not presenting new empirical research itself (such as in a review article, and particularly a qualitative review), then the authors may forgo any Methods and Results sections. Instead, there is a different structure such as an Introduction section followed by sections for each of the different aspects of the body of research being reviewed, and then perhaps a Discussion section. 
• Multi-experiment papers – when there are multiple experiments, it is common to follow the Introduction with an Experiment 1 section, itself containing Methods, Results, and Discussion subsections. Then there is an Experiment 2 section with a similar structure, an Experiment 3 section with a similar structure, and so on until all experiments are covered.  Towards the end of the paper there is a General Discussion section followed by References.  Additionally, in multi-experiment papers, it is common for the Results and Discussion subsections for individual experiments to be combined into single “Results and Discussion” sections.

Departures from APA Style

In some cases, official APA style might not be followed (however, be sure to check with your editor, instructor, or other sources before deviating from standards of the Publication Manual of the American Psychological Association).  Such deviations may include:

• Placement of Tables and Figures  – in some cases, to make reading through the paper easier, Tables and/or Figures are embedded in the text (for example, having a bar graph placed in the relevant Results section). The embedding of Tables and/or Figures in the text is one of the most common deviations from APA style (and is commonly allowed in B.S. Degree Research Papers and Honors Theses; however you should check with your instructor, supervisor, or editor first). 
• Incomplete research – sometimes a B.S. Degree Research Paper in this department is written about research that is currently being planned or is in progress. In those circumstances, sometimes only an Introduction and Methods section, followed by References, is included (that is, in cases where the research itself has not formally begun).  In other cases, preliminary results are presented and noted as such in the Results section (such as in cases where the study is underway but not complete), and the Discussion section includes caveats about the in-progress nature of the research.  Again, you should check with your instructor, supervisor, or editor first.
• Class assignments – in some classes in this department, an assignment must be written in APA style but is not exactly a traditional research paper (for instance, a student asked to write about an article that they read, and to write that report in APA style). In that case, the structure of the paper might approximate the typical sections of a research paper in APA style, but not entirely.  You should check with your instructor for further guidelines.

Workshops and Downloadable Resources

• For in-person discussion of the process of writing research papers, please consider attending this department’s “Writing Research Papers” workshop (for dates and times, please check the undergraduate workshops calendar).

Downloadable Resources

• How to Write APA Style Research Papers (a comprehensive guide) [ PDF ]
• Tips for Writing APA Style Research Papers (a brief summary) [ PDF ]
• Example APA Style Research Paper (for B.S. Degree – empirical research) [ PDF ]
• Example APA Style Research Paper (for B.S. Degree – literature review) [ PDF ]

Further Resources

How-To Videos     

• Writing Research Paper Videos

APA Journal Article Reporting Guidelines

• Appelbaum, M., Cooper, H., Kline, R. B., Mayo-Wilson, E., Nezu, A. M., & Rao, S. M. (2018). Journal article reporting standards for quantitative research in psychology: The APA Publications and Communications Board task force report . American Psychologist , 73 (1), 3.
• Levitt, H. M., Bamberg, M., Creswell, J. W., Frost, D. M., Josselson, R., & Suárez-Orozco, C. (2018). Journal article reporting standards for qualitative primary, qualitative meta-analytic, and mixed methods research in psychology: The APA Publications and Communications Board task force report . American Psychologist , 73 (1), 26.  

External Resources

• Formatting APA Style Papers in Microsoft Word
• How to Write an APA Style Research Paper from Hamilton University
• WikiHow Guide to Writing APA Research Papers
• Sample APA Formatted Paper with Comments
• Sample APA Formatted Paper
• Tips for Writing a Paper in APA Style

1 VandenBos, G. R. (Ed). (2010). Publication manual of the American Psychological Association (6th ed.) (pp. 41-60).  Washington, DC: American Psychological Association.

2 geller, e. (2018).  how to write an apa-style research report . [instructional materials]. , prepared by s. c. pan for ucsd psychology.

Back to top  

• Formatting Research Papers
• Using Databases and Finding References
• What Types of References Are Appropriate?
• Evaluating References and Taking Notes
• Citing References
• Writing a Literature Review
• Writing Process and Revising
• Improving Scientific Writing
• Academic Integrity and Avoiding Plagiarism
• Writing Research Papers Videos

How to Make Perfect-Structured Research Paper: Best Tips

Table of contents

• 1 Why Is It Necessary to Maintain the Research Paper Structure?
• 2.1 Title and Abstract
• 2.2 Introduction
• 2.3 Literature Review
• 2.4 Methodology
• 2.5 Results
• 2.6 Discussion
• 2.7 Conclusion
• 2.8 References
• 2.9 Appendices
• 3 Tips for Structuring a Research Paper
• 4 Mistakes in Structuring Research Paper
• 5.1 Introduction
• 5.2 Methodology
• 5.3 Results
• 5.4 Conclusion
• 6 Bottom Line

A research paper is a piece of academic writing that contains independent research analysis and argument. A research paper’s structure helps the writer organize their ideas, and PapersOwl would give ways to structure your academic research paper. It also shows their findings and communicates their contribution. The claim that gives significance to your work must be backed up by data and a logic that gives it credibility.

• You can get a free guide from PapersOwl on properly structuring a research paper.
• We also provide common mistakes and corrections in the research paper outline.
• This article will provide examples and writing process tips for each section.

Why Is It Necessary to Maintain the Research Paper Structure?

The structure of an academic research paper outline is a part of the process that requires the most attention. It has many helpful functions that assist during the writing and define the writer as a scientist. The basic structure has the following functions.

• Expository function. It reflects all the ideas that will be shown in the task.
• Informative function. For potential readers, the structure is a first glance at the issue. It is the first piece of data that is available to them.
• Structuring function. All the parts of writing a research paper are essential. They include appendices, figures, and tables. They will help during writing as they become the reflection of the order of the ideas.

Understanding the Research Paper Structure Parts

As is typical for all types of academic writing, a research paper has many components. They include the title page, abstract, Introduction, method, findings, discussion, conclusion, references, and acknowledgments. A research paper has a specific format divided into various important sections, one of which is the introduction of the research paper , and each serves a distinct purpose. Writing a straightforward and successful paper requires coherence. Understanding of the components of the research paper structure is also required. Doing so helps the writer provide the reader with a more thorough message that they can better grasp.

Title and Abstract

The  title page is the first page of the paper that shows the paper’s title and the author’s name (s). It also shows the affiliation(s), acknowledgments, and other specific information relevant to the topic. The abstract is a concise summary of the paper that includes the main problem, question, or goal of the study, the methods used, the result section of the research paper or findings, and the implications or contributions of the study. The title page is the start of the investigation that reflects the organization of the core idea.

Introduction

The Introduction is the first section of the paper. It provides the background and context of the study. It reviews the relevant literature and states the research question or hypothesis. It also outlines the main points or technical arguments of the paper. The Introduction is a brief presentation of the main topic combined. Review the current state of the investigation in the present scientific papers and community.

Literature Review

This section examines pertinent research and earlier studies, spotting knowledge gaps. It also finds new prospects on the subject. A good literature review for a research paper  gives a broader view of the study and language. It also allows the reader to understand other related works better.

Methodology

The methods section describes the design, participants, materials, procedures, and data analytics methods for conducting the study. This section, the methods section of a research paper , should be equipped with all the events and details used to arrive at the research outcome. The methods section should provide enough detail. In case other researchers need to replicate the study.

The results section reports the main findings or outcomes of the study. Various means like figures, tables, graphs, charts, or other visual aids present the data. The main results sections should be objective and factual, without interpretation or discussion.

The discussion section interprets and evaluates the results of the study. It should explain how they answer the research question. It should show how they relate to previous studies. State the limitations or weaknesses of the study. Write out the implications or recommendations for further research or practice.

The conclusion section summarizes the main points of the paper . Restates the central research question or hypothesis. Highlights the main contributions or implications of the study. The conclusion section should refrain from introducing new information. Refrain from repeating what has been said before.

The annotated bibliography is an overview of the reference list. Include the utilized materials, both digital and physical resources. The references section lists all the cited sources in the paper, using a consistent citation style (such as APA or MLA.). Only used or quoted sources should be in the references section. Sources that were only consulted or read should be irrelevant.

Appendices should contain all the supplementary materials like charts and statistics materials. Mathematical solutions and formulas that describe the situation most effectively.

Tips for Structuring a Research Paper

Restructuring can help you organize your ideas. Moreover, present your key findings, and communicate your contribution to the scholarly debate.

Here are some tips to address a typical research paper:

• Consider the Target Audience: Your target audience is the readers who will read. They would be there to appreciate your research paper. They are the end users of the academic work paper. To write for your target audience, you need to have observed. You need to know their characteristics, needs, and preferences. Adapt your purpose, content, and style to suit their expectations and interests.
• Begin with an Outline: An outline can help you to clarify your thesis statement and research question. Identify the main points and any argument that supports your thesis. Structure your paper according to the required format and guidelines.
• Provide Clear Signposting: Providing clear signposting is important for guiding your reader through your argument. It helps in showing how your ideas are connected. Signposting can help you to state the main purpose of your paper. Also, state the main point and sub-points. Show the relationship between different points.
• Use the “context-content-conclusion” approach: This approach consists of providing the background and motivation for your paper. State your research question or problem. Formatting guidelines and outlining the structure of your paper. Present your outcome and evidence logically and summarize your main points.
• Summarize your research in the abstract: An abstract is a concise summary of your paper that includes the main aim, methods, results and discussions, and research paper conclusions , as it paints a more precise picture before digging deep into the body of work. A summarized work in the abstract when research writing attracts attention.
• Explain the importance of your research in the Introduction. This is crucial when research writing your typical research paper. It convinces the reader that your paper is worth reading. You can also tell a brief story that illustrates the problem or issue that your study tackles.

Mistakes in Structuring Research Paper

A research article is a formal document presenting a scientific study’s results and discussion. Many researchers make mistakes when writing research papers. This usually affects the quality of their work.

Some common mistakes are:

• The Introduction is an extensive review of the literature. It should not be a lengthy summary of all the previous studies on the topic. It can bore the reader and obscure the main point of the paper.
• The Methods section should describe how the study was organized. This includes the design, sample, procedures, instruments, and data analysis methods. Provide enough explanation and detail to understand and evaluate the study’s validity. Other researchers might intend to replicate or extend it.
• The Results section should be separate, concise, and focused on the main research question. Put detailed tables that contain supplementary or secondary information in the appendix or a supplementary file. The results can also be expressed in the text.
• In the Introduction and Discussion, back up key arguments with appropriate references. They should also acknowledge and cite the sources of their ideas. This would avoid plagiarism.
• The References section should list all the cited sources in the paper. Use a consistent and standard format for publication. It should include up-to-date and accessible references. It should focus on the current state of knowledge on the topic.
• The Discussion section should interpret and explain the results. It should be about the research questions, experiment, and objectives. Compare them with existing literature.
• Talk about the applications of the results for theory, practice, or future research in the Discussion section. It should address the limitations of the study. This includes sample size, design flaws, measurement errors, and generalizability issues.
• The research paper should include something other than superfluous or irrelevant information. Remove anything that does not intend to contribute to the research question. Do not add opinions or anecdotes.

Research Paper Structure Example

Various sites offer a good deal of basic structure types on the Internet. Of these types of research papers , research articles structured in APA or MLA are the most popular.

Here is an example of the research paper’s main parts:

• The importance of the problem.
• The description of the current situation.
• List the objectives of the investigation.

Meditation is a practice that involves focusing your attention on a single object, thought, or sensation. This practice is a powerful tool that helps to cultivate inner peace and well-being. Rooted in ancient traditions and religion, meditation has gained significant attention in contemporary scientific research. This paper delves into the impact of meditation on the human mind and body, examining its physiological, psychological, and emotional benefits.

By exploring various meditation techniques and their effects on stress reduction, cognitive enhancement, emotional regulation, and overall well-being, this research aims to shed light on the transformative potential of meditation and its implications for personal growth and holistic health. Through a comprehensive analysis of existing studies and empirical evidence, this paper presents a compelling case for integrating meditation practices into daily life, highlighting its potential to enhance our physical and mental well-being profoundly.

This introduction contains all the necessary parts, which include:

• A catchy hook to draw and hold the reader’s attention.
• Background information to help the reader understand the relevance of the research.
• The objectives and purpose of the study.
• A thesis statement.
• The scope of the research.
• Organize the process.
• Define the method.
• Describe a potential sample.
• State the procedure of data collection.
• State the results of the gathered material.
• Describe the elements of your work.
• State the key points of the investigation.

The body part consists of several paragraphs, they are the basic building blocks of research papers. Each one should focus on a single claim or idea that helps to establish the overall argument of the paper’s purpose.

Here is an example of a well-structured paragraph:

Meditation is commonly practiced because of its ability to reduce stress. According to Jha et al. (2015), regular meditation practice can be linked to a significant decrease in cortisol, the stress hormone. In the study, a group of participants underwent a mindfulness meditation program for eight weeks, and the results showed a significant reduction in cortisol levels compared to the control group. This suggests meditation can effectively improve the body’s stress response, promoting relaxation and calmness.

• Sentence 1 is the topic sentence. It introduces the idea to be explored in the paragraph.
• Sentence 2 is the evidence. It provides evidence for the idea outlined in the topic sentence.
• Sentence 3 is a supporting sentence. It provides additional details of the sample study.
• Sentence 4 is the closing sentence. It summarizes the main point of the paragraph.
• Write the results of the work.
• Analyze the results with the set goals.
• Define the perspectives for future investigation.

Here is an example of the conclusion paragraph:

Meditation is a simple and effective way to improve one’s mental and physical health. By practicing meditation regularly, one can experience less stress. Also reduces anxiety and depression. It boosts concentration, memory, and creativity. It doesn’t require extensive training—just a little guidance and motivation. So embrace this practice, experience its wonders, and invite serenity and growth into your life.

This conclusion does the following:

• It restates the main idea or thesis of the article.
• It summarizes the main points or arguments that support the thesis.
• It provides a recommendation.

Bottom Line

A research report needs to be logical, precise, and brief. Follow the typical parts and structure. It consists of the Introduction, Methods, Results, and Discussion. The guide above would have helped you write research papers , plan a research paper, and impress others with top-quality paperwork.

It should be clear of pointless details that could irritate the reader. If you still need help, you can ask for a research paper writer service that works without days off and around the clock.

Apply the basic structure for a better understanding of the message. It benefits the readers, communicates your scientific research better, and gives scholars an ambiance.

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Google DeepMind’s Groundbreaking AI for Protein Structure Can Now Model DNA

Google spent much of the past year hustling to build its Gemini chatbot to counter ChatGPT , pitching it as a multifunctional AI assistant that can help with work tasks or the digital chores of personal life. More quietly, the company has been working to enhance a more specialized artificial intelligence tool that is already a must-have for some scientists.

AlphaFold , software developed by Google’s DeepMind AI unit to predict the 3D structure of proteins, has received a significant upgrade. It can now model other molecules of biological importance, including DNA, and the interactions between antibodies produced by the immune system and the molecules of disease organisms. DeepMind added those new capabilities to AlphaFold 3 in part through borrowing techniques from AI image generators.

“This is a big advance for us,” Demis Hassabis , CEO of Google DeepMind, told WIRED ahead of Wednesday’s publication of a paper on AlphaFold 3 in the science journal Nature . “This is exactly what you need for drug discovery: You need to see how a small molecule is going to bind to a drug, how strongly, and also what else it might bind to.”

AlphaFold 3 can model large molecules such as DNA and RNA, which carry genetic code, but also much smaller entities, including metal ions. It can predict with high accuracy how these different molecules will interact with one another, Google’s research paper claims.

The software was developed by Google DeepMind and Isomorphic labs, a sibling company under parent Alphabet working on AI for biotech that is also led by Hassabis. In January, Isomorphic Labs announced that it would work with Eli Lilly and Novartis on drug development.

AlphaFold 3 will be made available via the cloud for outside researchers to access for free, but DeepMind is not releasing the software as open source the way it did for earlier versions of AlphaFold. John Jumper, who leads the Google DeepMind team working on the software, says it could help provide a deeper understanding of how proteins interact and work with DNA inside the body. “How do proteins respond to DNA damage; how do they find, repair it?” Jumper says. “We can start to answer these questions.”

Understanding protein structures used to require painstaking work using electron microscopes and a technique called x-ray crystallography. Several years ago, academic research groups began testing whether deep learning , the technique at the heart of many recent AI advances, could predict the shape of proteins simply from their constituent amino acids, by learning from structures that had been experimentally verified.

In 2018, Google DeepMind revealed it was working on AI software called AlphaFold to accurately predict the shape of proteins. In 2020, AlphaFold 2 produced results accurate enough to set off a storm of excitement in molecular biology. A year later, the company released an open source version of AlphaFold for anyone to use, along with 350,000 predicted protein structures, including for almost every protein known to exist in the human body. In 2022 the company released more than 2 million protein structures.

Reece Rogers

Steven Levy

Brenda Stolyar

The latest AlphaFold’s ability to model different proteins was improved in part through an algorithm called a diffusion model that helps AI image generators like Dall-E and Midjourney create weird and sometimes photo-real imagery. The diffusion model inside AlphaFold 3 sharpens the molecular structures the software generates. The diffusion model is able to generate plausible protein structures based on patterns it picked up from analyzing a collection of verified protein structures, much as an image generator learns from real photographs how to render realistic-looking snapshots.

AlphaFold 3 is not perfect, though, and offers a color-coded confidence scale for its predictions. Areas of a protein structure colored blue indicate high confidence, while red areas show less certainty.

David Baker , a professor at the University of Washington who leads a group working on techniques for protein design, has competed with AlphaFold. In 2021, before DeepMind open sourced its creation, his team released an independent protein-structure prediction inspired by AlphaFold. His own lab recently released a diffusion model to help model a wider range of molecular structures, but he concedes that AlphaFold 3 is more capable. “The structure prediction performance of AlphaFold 3 is very impressive,” Baker says.

Baker adds that it is a shame that the source code for AlphaFold 3 has not been released to the scientific community.

Hassabis, who leads all of Alphabet’s AI initiatives, has long taken a special interest in the potential for AI to accelerate scientific research . But he says the latest techniques being developed for AlphaFold, a highly specialized AI system, could prove useful for building more general systems that aim to exceed human capabilities on many dimensions.

If AI programs like Google’s Gemini become a lot more capable over the next decade, he says, “you could imagine them using things like AlphaFold as tools, to achieve some other goal.”

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Quantitative Biology > Biomolecules

Title: rna secondary structure prediction using transformer-based deep learning models.

Abstract: The Human Genome Project has led to an exponential increase in data related to the sequence, structure, and function of biomolecules. Bioinformatics is an interdisciplinary research field that primarily uses computational methods to analyze large amounts of biological macromolecule data. Its goal is to discover hidden biological patterns and related information. Furthermore, analysing additional relevant information can enhance the study of biological operating mechanisms. This paper discusses the fundamental concepts of RNA, RNA secondary structure, and its prediction.Subsequently, the application of machine learning technologies in predicting the structure of biological macromolecules is explored. This chapter describes the relevant knowledge of algorithms and computational complexity and presents a RNA tertiary structure prediction algorithm based on ResNet. To address the issue of the current scoring function's unsuitability for long RNA, a scoring model based on ResNet is proposed, and a structure prediction algorithm is designed. The chapter concludes by presenting some open and interesting challenges in the field of RNA tertiary structure prediction.

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An improved multi-scale convolutional neural network with gated recurrent neural network model for protein secondary structure prediction

• Original Article
• Published: 13 May 2024

Cite this article

• Vrushali Bongirwar 1 &
• A. S. Mokhade 2  

Protein structure prediction is one of the main research areas in the field of Bio-informatics. The importance of proteins in drug design attracts researchers for finding the accurate tertiary structure of the protein which is dependent on its secondary structure. In this paper, we focus on improving the accuracy of protein secondary structure prediction. To do so, a Multi-scale convolutional neural network with a Gated recurrent neural network (MCNN-GRNN) is proposed. The novel amino acid encoding method along with layered convolutional neural network and Gated recurrent neural network blocks helps to retrieve local and global relationships between features, which in turn effectively classify the input protein sequence into 3 and 8 states. We have evaluated our algorithm on CullPDB, CB513, PDB25, CASP10, CASP11, CASP12, CASP13, and CASP14 datasets. We have compared our algorithm with different state-of-the-art algorithms like DCNN-SS, DCRNN, MUFOLD-SS, DLBLS_SS, and CGAN-PSSP. The Q3 accuracy of the proposed algorithm is 82–87% and Q8 accuracy is 69–77% on different datasets.

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Data used in this study is publicly available.

VrushaliBongirwar ASM (2022) Different methods, techniques and their limitations in protein structure prediction: a review. Progr Biophys Mol Biol 173:72–82. https://doi.org/10.1016/j.pbiomolbio.2022.05.002

Article   Google Scholar  

Chou K-C (2001) Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins 43(3):246–255. https://doi.org/10.1002/prot.10355

Gao CF, Wu XY (2018) Feature extraction method for proteins based on markov tripeptide by compressive sensing. BMC Bioinform 19(1):239–232. https://doi.org/10.1186/s12859-018-2235-x

Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292(2):195–202. https://doi.org/10.1006/jmbi.1999.3091

Smolarczyk T, Roterman-Konieczna I, Stapor K (2020) Protein secondary structure prediction: a review of progress and directions. Curr Bioinform 15:90–107. https://doi.org/10.2174/1574893614666191017104639

Chou PY, Fasman GD (1974) Conformational parameters for amino acids in helical, B-sheet, and random coil regions calculated from proteins. Biochemistry 13(2):211–222

Rost B, Sander C (1993) Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol 232(2):584–599. https://doi.org/10.1006/jmbi.1993.1413

McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16(4):404–405. https://doi.org/10.1093/bioinformatics/16.4.404

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389–3402

Ward JJ, McGuffin LJ, Buxton BF, Jones DT (2003) Secondary structure prediction with support vector machines. Bioinformatics 19(3):1950–1955. https://doi.org/10.1093/bioinformatics/btg223

Dor O, Zhou Y (2007) Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training. Proteins 66(4):838–845. https://doi.org/10.1002/prot.21298

Faraggi E, Zhang T, Yang Y, Lukasz Kurgan YZ (2011) SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles. J Comput Chem 33(3):259–267. https://doi.org/10.1002/jcc.21968

Bettella F, Rasinski D, Knapp EW (2012) Protein secondary structure prediction with SPARROW. J Chem Inf Model 52(2):545–556. https://doi.org/10.1021/ci200321u

Ashraf Yaseen YL (2014) Context-based features enhance protein secondary structure prediction accuracy. J Chem Inf Model 54(3):992–1002. https://doi.org/10.1021/ci400647u

Drozdetskiy A, Cole C, Procter J, Barton GJ (2015) JPred4: a protein secondary structure prediction server. Nucleic Acids Res 43(April):389–394. https://doi.org/10.1093/nar/gkv332

Heffernan R, Paliwal K, Lyons J, Dehzangi A, Sharma A (2015) Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning. Nature Publishing Group. https://doi.org/10.1038/srep11476

Book   Google Scholar  

Wang S, Peng J, Ma J, Xu J (2016) Protein secondary structure prediction using deep convolutional neural fields. Sci Rep. https://doi.org/10.1038/srep18962

Heffernan R, Yang Y, KuldipPaliwal YZ (2017) Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility. Bioinformatics 33(18):2842–2849. https://doi.org/10.1093/bioinformatics/btx218

Zhen Li YY (2016). Protein secondary structure prediction using cascaded convolutional and recurrent neural networks. In: Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence (IJCAI-16), 2560–2567.

Fang C, Shang Y, Xu D (2018) MUFOLD-SS: new deep inceptioninside- inception networks for protein secondary structure prediction. Proteins 86(5):592–598. https://doi.org/10.1002/prot.25487

Guo L, Jiang Q, Jin X, Liu L, Zhou W, Yao S (2020) A deep convolutional neural network to improve the prediction of protein secondary structure. Curr Bioinform 15:767–777. https://doi.org/10.2174/1574893615666200120103050

Yuan L, Hu X, Ma Y, Liu Y (2022) DLBLS_SS: protein secondary structure prediction using deep learning and broad learning system. RSC Adv 12:33479–33487. https://doi.org/10.1039/d2ra06433b

Jin X, Guo L, Jiang Q, Wu N (2022) Prediction of protein secondary structure based on an improved channel attention and multiscale convolution module. Front Bioeng Biotechnol 10:901018. https://doi.org/10.3389/fbioe.2022.901018

Hasic H, Buza E, Akagic A (2017) A hybrid method for prediction of protein secondary structure based on multiple artificial neural networks. In: 2017 40th international convention on information and communication technology, electronics and microelectronics (MIPRO) pp. 1195-1200. IEEE. https://doi.org/10.23919/MIPRO.2017.7973605

Yavuz BÇ, Yurtay N, Ozkan O (2018) Prediction of protein secondary structure with clonal selection algorithm and multilayer perceptron. IEEE Access 6:45256–45261. https://doi.org/10.1109/ACCESS.2018.2864665

Pollastri G, Przybylski D, Rost B (2003) Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 47(2):228–235. https://doi.org/10.1002/prot.10082

Wang Z, Zhao F, Peng J, Xu J (2011) Protein 8-class secondary structure prediction using conditional neural fields. Proteomics 11(19):3786–3792. https://doi.org/10.1002/pmic.201100196

Busia A, Jaitly N (2017). Next-step conditioned deep convolutional neural networks to improve protein secondary structure prediction. In: Conference on intelligent systems for molecular biology & European conference on computational biology, 1–11. https://doi.org/10.48550/arXiv.1702.03865

Zhou JTO (2014). Deep supervised and convolutional generative stochastic network for protein secondary structure prediction. In: Proceedings of the 31st International Conference on International Conference on Machine Learning Beijing, China, 1–9. https://doi.org/10.48550/arXiv.1403.1347

Fang C, Shang Y, Xu D (2017). A new deep neighbor residual network for protein secondary structure prediction. In: IEEE 29th International Conference on Tools with Artificial Intelligence (ICTAI), Boston, MA, USA, 66–71.

Guo Y, Li W, Wang B, Liu H, Zhou D (2019) DeepACLSTM: deep asymmetric convolutional long short-term memory neural models for protein secondary structure prediction. BMC Bioinform 20(341):1–12. https://doi.org/10.1186/s12859-019-2940-0

Drori I, Dwivedi I, Shrestha P, Wan J, Wang Y, He Y, Mazza A, Krogh-Freeman H, Leggas D, Sandridge K, Nan L, Thakoor K, Joshi C, Goenka S, Keasar C, (2018). High quality prediction of protein q8 secondary structure by diverse neural network architectures. NIPS 2018 Workshop on Machine Learning for Molecules and Materials, 1–10. https://doi.org/10.48550/arXiv.1811.07143

Yang W, Hu Z, Zhou L, Jin Y (2022) Knowledge-based systems protein secondary structure prediction using a lightweight convolutional network and label distribution aware margin loss. Knowl-Based Syst 237:1–12. https://doi.org/10.1016/j.knosys.2021.107771

Hinton GE, Krizhevsky A, Srivastava N, Sutskever I, Salakhutdinov R (2014) Dropout: a simple way to prevent neural networks from overfitting. J Mach Learn Res 15:1929–1958

MathSciNet   Google Scholar  

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We thank the Department of Computer Science and Engineering, Shri Ramdeobaba College of Engineering and Management, Nagpur for providing NVIDIA GPU A100 for experimentation.

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Vrushali Bongirwar

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Bongirwar, V., Mokhade, A.S. An improved multi-scale convolutional neural network with gated recurrent neural network model for protein secondary structure prediction. Neural Comput & Applic (2024). https://doi.org/10.1007/s00521-024-09822-8

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Google DeepMind and Isomorphic Labs reveal AI able to predict large swathes of molecular biology

Alphabet’s Google DeepMind and its sister company Isomorphic Labs have created a new AI model that they say can help predict both the structure and interaction of most molecules involved in biological processes, including proteins, DNA, RNA, and some of chemicals used to create new medicines. The new model is a potentially giant leap for biological research. The companies are allowing researchers working on non-commerical projects to query the model for free through an internet-based interface.

Isomorphic Labs, which was spun out of Google DeepMind, has also begun using the system internally to speed its efforts to discover new drugs. The company currently has partnerships with Eli Lilly and Novartis aimed at developing multiple drugs, although the specifics of which diseases the companies are targeting has not been revealed. Proteins are the building blocks of life and their interactions with one another and with other molecules are the mechanism through which life’s processes happen. Being able to predict those interactions more accurately will help researchers advance science. by helping them understand the mechanism behind diseases, and, potentially, how to better treat and cure them. Called AlphaFold 3, the new AI software represents a major update and expansion of capabilities beyond Google DeepMind’s previous AlphaFold 2 system . Researchers from the companies published a paper on AlphaFold 3 today in the prestigious scientific journal Nature . Demis Hassabis, who serves as CEO of both Google DeepMind and Isomorphic, described the new model’s interaction predictions as “incredibly important for drug discovery.” John Jumper, the senior researcher who heads the protein structure team at Google DeepMind, described AlphaFold 3 as “an evolution of AlphaFold 2, but a really big one that opens up new avenues.” He also said he was excited to see what researchers would do with the new model, noting that AlphaFold 2 had already opened up new areas of biological research that he could never have imagined. AlphaFold 2 has been cited more than 20,000 times in other published scientific papers and has been used to work on drugs for malaria, cancer, and many other diseases.

AlphaFold 2 and 3

Debuted in late 2020, AlphaFold 2 solved a grand scientific challenge because it was able to accurately predict the structure of most proteins simply from their DNA sequence. The company later published the system’s predicted structures for all 200 million proteins with known DNA sequences and made them freely available to scientists in a massive database. Prior to this, only about 100,000 proteins had known structural information. Knowing the shape and structure of a protein is often a key part of understanding how it will function. But proteins do not work in isolation. And AlphaFold 2 was not designed to predict how proteins would interact with one another—although scientists soon found ways to modify AlphaFold 2 to make some of these predictions. Nor could AlphaFold 2 predict protein interactions with other kinds of molecules, such as DNA, RNA, ligands, and ions, that are found inside living things. It also could not predict the interaction of these other molecules with one another. AlphaFold 3 can. The system is not always accurate, but represents a major leap forward in performance. According to tests conducted by Google DeepMind and Isomorphic, AlphaFold 3 can accurately predict 76% of protein interactions with small molecules, compared to 52% for the previous best predictive software. It can predict 65% of DNA interactions compared to the next leading system, which only achieves 28%. And in protein to protein interactions, it can predict 62% accurately, more than doubling what AlphaFold 2 could do. Like AlphaFold 2, AlphaFold 3 also includes a confidence score alongside its predictions that give scientists some indication of whether they should trust the system’s output. This reduces the chance that the AI model will experience the sort of “hallucinations”—plausible but inaccurate outputs—that have plagued recent generative AI models. Jumper said that so far researchers have found these confidence scores to be highly correlated with whether the structural and interaction predictions are accurate. In other words, the system is not likely to be confidently wrong. There are a few classes of proteins where AlphaFold 3 is still not accurate. These include proteins that scientists consider “intrinsically disordered,” meaning they only assume a particular structure in the presence of another protein or molecule, perhaps changing their shape radically depending on circumstance, according to Max Jaderberg, the chief AI scientist at Isomorphic Labs.

Bioweapons worries

While many, including former Google DeepMind cofounder Mustafa Suleyman , who is now heading up a new consumer AI division at Microsoft , and Dario Amodei, the confounder and CEO of Google DeepMind rival Anthropic, have warned that rapid advances in AI may lead to the proliferation of bioweapons by radically lowering the knowledge barrier to creating deadly pathogens, Jumper said Google DeepMind and Isomorphic had consulted more than 50 experts in biosecurity, bioethics, and AI safety and concluded that the marginal risk AlphaFold 3 might present in terms of bioweapons creation was far outweighed by the system’s potential benefits to science, including advancing human understanding of disease and finding possible treatments.

The two companies are also only allowing access to the model through an internet service that allows outside researchers to prompt the system and receive a prediction, but does not give them access to the model itself or its underlying computer code. Unlike some efforts to create large language models (LLMs) for biology that can be prompted in natural language to produce a formula for a compound with particular properties, AlphaFold 3 still requires someone to have a fairly good understanding of biology to use it effectively. In addition, any suggested molecular structure it predicts would still need to be produced or isolated in a lab, a process that also requires relatively specialized knowledge. AlphaFold 3 uses a significantly different AI design than its predecessor AlphaFold 2. While both AI models are based around transformers, a kind of artificial neural network architecture pioneered by Google researchers in 2017, Jumper said the team working on the new system replaced entire “blocks” of the large transformer that powered AlphaFold 2.

AlphaFold 2 relied heavily on evolutionary information about the proteins for which it was trying to predict structures, while AlphaFold 3 leans on this evolutionary signal far less, using it only at the first step of its structure prediction. Instead, the new system devotes the majority of its components to working through the physical shape of the molecules it is making predictions about.

AlphaFold 3 also uses a diffusion model, similar to ones used for popular text-to-image generation models such as OpenAI’s DALL-E 3 or Midjourney, to learn how to puzzle out the precise atomic structures of molecules. Overall, despite covering far more substances than AlphaFold 2, AlphaFold 3 is a simpler design, with fewer separate components, than its predecessor.  

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