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Exploring s-nitrosoglutathione reductase function in the non-vascular plant, marchantia polymorpha , bioengineering inducible gene expression in leafy brassicas to address post-harvest-specific requirements , sex determination, sex chromosomes, and supergenes: evolution of an unusual reproductive system , super-resolution imaging of proteins in live cells using reversibly interacting peptide pairs , understanding the role and function of spocd1 in pirna-directed de novo dna methylation , sequencing b cell receptor repertoires in human disease: applications in myalgic encephalomyelitis/chronic fatigue syndrome and in experimental malaria infection , role of tyrosine phosphatase ptpn22 in ctl responses to tumours and t cell exhaustion , rna editing ligases as novel drug targets in trypanosomatid parasites , pifs as a novel target in soybean to modulate the shade avoidance syndrome , structure and function of microtubule nucleation proteins , evaluation of the structural, functional, cellular and molecular basis of heart pathophysiology in mouse models of spinal muscular atrophy , understanding and utilising bacterial growth rate changes at high external osmolarities , origin and maintenance of diversity in british euphrasia (orobanchaceae) , single-cell time-series analysis of metabolic rhythms in yeast , ectopic heterochromatin provides an alternative route to fungal resistance , understanding adaptive immunity using immune receptor repertoire sequencing , mapping inbreeding depression in wild red deer (cervus elaphus) , transcription-only cell-free systems and their application in biosensing , encapsulin engineering for metal nanoparticle production , adaptive genomics and phylogeography of guazuma ulmifolia (malvaceae) .

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Example Dissertation Titles

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Major subjects

Biochemistry.

Do histone modifications control gene expression?

Does endotoxin cause or contribute to neurodegenerative diseases?

Molecular interactions of drugs with the allosteric sites of vertebrate Cys-loop receptors

Why do bacteria carry toxin-antitoxin systems?

Aneuploidy in cancer: lessons so far

Big data in genomics and healthcare and how it has defined cancer diagnosis and treatment

Modelling in Biology: accurate descriptions of our pathetic thinking or pathetic descriptions of the real world?

Trace the economic and biological causes of the current antibiotic resistance crisis. Is there a solution and, if so, does it lie in the hands of patients, clinicians, regulators or researchers?

Transposable elements – a powerful force driving evolution

Can the gut microbiota influence host appetite? Implications for the aetiology of obesity

Can vaccine innovation solve the last mile problem for vaccines in low-resource settings

Eradication of Polio: Past Challenges and Future Prospects

Is the age of antibiotics over?

Microbiome regulation of the gut-brain axis: implications for anxiety and depression

On the origin of the bacterial flagellum: an example of irreducible complexity?

Recent advances in the blockade of immune checkpoints in cancer immunotherapy

What are the major causes of delay in response to emerging disease outbreaks: the case of the 2014-2016 Ebola outbreak in West Africa

Pharmacology

Cystic-fibrosis related diabetes

How do SNAREs mediate membrane fusion?

Is CRISPR ready for the clinic?

Phantom pain: a ghost in the machine or a biological basis?

Plant-derived polysaccharides - sweet medicine of tomorrow?

Why are opioids problematic analgesics?

Plant Sciences

"Scrambled Genomes": examining the methodology and goals of the Sc2.0 synthetic genome project

Engineering C4 Rice: Molecular Targets and Progress so far

Is Trehalose-6-phosphate a central regulator of plant carbon partitioning?

Sucrose signalling and its role in plant development

Who needs cells anyway?

Is visual adaptation diminished in autism spectrum disorders?

Memory reconsolidation blockade: a novel treatment for Post-Traumatic Stress Disorder

Parental influence on child language development: does gender matter?

Sleep disorders as model for Consciousness Research: a cognitive framework for parasomnias

The role of genetics in the transgenerational transmission of memories

The role of insulin in cognitive decline in the elderly

Physiology, Development and Neuroscience

Adaptations of cancer cells for metastasis to the brain

How and why is the infant gut microbiota affected by caesarean section? The crying need for well-designed research

How do astrocytes support and modulate neuronal function? Exploring neurovascular coupling, neurometabolic coupling, and gliotransmission

The missing nuances of science and society: How popular science is shaping policy and understanding

The role of operant conditioning in spinal cord plasticity and its potential therapeutic implications for spinal cord injury

The significance of proinflammatory mediators in disrupting HRV: a link to cardiovascular morbidity in schizophrenia?

Psychology, Neuroscience and Behaviour

Prenatal stress: relevance to major depressive disorder

Promises and limitations of a combinatorial approach to spinal cord injury

Social neurons? A critical examination of how individual neurons might implement primate social cognition

The bidirectional relationship between the hippocampus and metabolic syndrome

The Cognitive and Neurobiological Benefits of an Imperfect Memory

Why are drug seeking habits maladaptive?

How have homosexual mating preferences evolved in males and females?

How relevant is the Drosophila segmentation paradigm to the study of segmentation in other arthropods and other animals?

Mechanisms of mass extinction

Migration of Homo erectus out of Africa

The meaning of alarm calls: honesty and deception

Wolves verses Eurasian Lynx as candidates for large predator reintroduction in mainland Britain - which may be the most suitable and why?

Minor subjects

Conservation science.

Causes and remedies for the decline in red squirrel numbers in Britain

How do deer impact forest organisms in UK lowland woodland?

Reintroduction and translocation as conservation tools for rhinos

Translocation as a tool for tiger ( Panthera tigris ) conservation: problems and potential solutions

With respect to myxomatosis and RHD virus how have rabbit populations co-evolved with the viruses and how may rabbit populations be affected in the future?

Development and Psychopathology

To what extent have biasing in screening and diagnosis contributed to the sex ratios observed in autism?

Health, Medicine and Society

Medicalisation and violence against women: implications for the medical encounter

Human Ecology and Behaviour

The use of wood in prehistory

Neural Degeneration and Regeneration

Progress towards establishing lead times of biomarkers for early diagnosis of idiopathic Parkinson's disease

The Pharmacological Targeting of the Amyloid-beta pathway in Alzheimer's: issues and prospects

Philosophy and Ethics of Medicine

Dementia: how changing perspectives affect clinical decision making

Should the MMR vaccine be mandatory? The problem of herd immunity threshold

Psychology and Social Issues

Reducing Extremist Violence by increasing Integrative Complexity - why understanding the role of emotion is central to success

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Home > USC Columbia > Medicine, School of > Biomedical Science > Biomedical Science Theses and Dissertations

Biomedical Science Theses and Dissertations

Theses/dissertations from 2023 2023.

Gluten Free Diet Ameliorates SI Enteropathy in IGA Deficient Mice , Ryan Albert William Ball

Aortopathies: Mechanism of Pathogenesis and Therapy , Mengistu G. Gebere

Leptin, Serotonin, and the Control of Food Intake , Nicholas David Maxwell

Targeting Macrophages in Cancer Models Using Natural Compounds , Sierra Jordan McDonald

Neurodevelopmental and Transient Impacts of Brain Kynurenic Acid Elevation and Sleep-Wake Behavior , Katherine Rentschler

Exploration Into the Relationship Between Colitis and Depression: A Potential Role for the Aryl Hydrocarbon Receptor , Kasie Lynn Roark

B-Cell-Specific MHCII Promotes Host-Microbiome Symbiosis , Mary Melissa Roland

Cardiac Imaging in Mice With Micro-Computed Tomography: An Assessment , Kyle Porter Stegmann

Theses/Dissertations from 2022 2022

Role of Epigenome in Regulation of Inflammation By AHR Ligands 2,3,7,8-Tetrachlorodibenzo-P-Dioxin and 6-Formylindolo[3,2-B] Carbazole , Alkeiver Cannon

Neurochemical, Molecular, and Behavioral Effects of Intranasal Insulin , Jennifer Marie Erichsen

Sex Differences and Potential Non-invasive Treatments for Calcific Aortic Valve Disease , Henry Pascal Helms

Decellularization Strategies of Naturally Derived Biomaterials for Tissue Engineering Applications , Julia Elizabeth Hohn

Role of AhR in the Epigenetic Regulation of Immune Cells in Lungs During Acute Respiratory Distress Syndrome , Bryan Latrell Holloman

The Submission of a Section 513(g) Request For Information , Morgan Ashley Lano

Engineering and Optimization of an AAV Based Viral Vector to Limit the In-Vitro Expression of SARS-CoV-2 Spike-Protein , Ronald Anderson Smithwick

In Vitro and in Vivo Studies of Mediator Kinase , Lili Wang

Theses/Dissertations from 2021 2021

Role of AhR Ligands in Immune Modulation to Suppress Inflammation Through the Regulation of Microrna and Gut Microbiome , Osama Azeldeen Abdulla

Role of Estrogen in Regulating Diet-Induced Obesity in Females , Ahmed Aladhami

Impact of Acetylcholine on Internal Pathways To Basal Amygdala Pyramidal Neurons , Tyler Daniel Anderson-Sieg

Pseudomyxoma Peritonei Derived Cancers: A Novel Study on Growth and Growth Suppression Utilizing Common Colorectal Cancer Agents , Raymond Kennith Bogdon

Impact of Acetylcholine on Amygdala Network Oscillations , Joshua Xavier Bratsch-Prince

Real Time Neurochemical Analysis of the Brain For Pharmacological Treatments in Mood Disorders And Neurodegeneration , Anna Marie Buchanan

Regulation of Inflammatory Processes by Tryptamine, Cannabidiol and 2,3,7,8-Tetrachlorodibenzo-P-Dioxin , Nicholas Dopkins

Study of the Effect of B-Cell-Intrinsic Mhcii Antigen Presentation on Germinal Center B Cell Evolution Using The Brainbow Mouse Model , Nia Hall

Mechanism of Therapeutic Efficacy of New Drugs in Glioblastoma , Firas Hameed Khathayer

The Effect of Low Dose Penicillin on Tumor Development in Apc Min/+ Mice , Kinsey Ann Sierra Meggett

Defining the Pathophysiology of Gut Humoral Immunodeficiency , Ahmed Dawood Mohammed

The Role PDE11A4 Signaling and Compartmentalization in Social Behavior , Kaitlyn Pilarzyk

Anatomical Correlates of Age-Related Basal Forebrain Dysfunction , Brandy Lynn Somera

A Novel Model to Study Adipose-Derived Stem Cell Differentiation , Austin N. Worden

Theses/Dissertations from 2020 2020

Molecular Mechanisms of Loss of E7 Expression in HPV16 – Transformed Human Keratinocytes , Fadi Farooq Abboodi

17 β-Estradiol and Phytoestrogens Attenuate Apoptotic Cell Death in HIV-1 Tat Exposed Primary Cortical Cultures , Sheila Marie Adams

Helicobacter’s Effects on Colitis/Colon Cancer and the Response to Indole 3-Carbinol , Rasha Raheem Abdulhamza Alkarkoushi

A Comparative Study of Cannabinoids & CB1 Receptor GI Signaling , Haley Kristen Andersen

Expansion Microscopy: A New Approach to Microscopic Evaluation , Ashley Ferri

The Role of Acute and Chronic Neuroinflammation in Depression: Uncovering the Relationship Between Histamine and Serotonin Transmission , Melinda Hersey

The Use of Natural Anthraquinone Emodin as a Primary and Complementary Therapeutic in the Treatment of Colorectal Cancer , Alexander-Jacques Theodore Sougiannis

The Effects of Super-Resolution Microscopy on Colocalization Conclusions Previously Made With Diffraction-Limited Systems in the Biomedical Sciences , Madison Emily Yemc

Theses/Dissertations from 2019 2019

Role of Epigenome and Microbiome in Cannabinoid and Aryl Hydrocarbon Receptor-Mediated Regulation of Inflammatory and Autoimmune Diseases , Zinah Zamil Al-Ghezi

Tissue-Specific Roles of Transforming Growth Factor Beta Ligands in Cardiac Outflow Tract Malformations and Calcific Aortic Valve Disease , Nadia Al-Sammarraie

Role of Epigenetic, Molecular and Cellular Pathways in the Regulation of Inflammation , William James Becker

Neurochemical and Behavioral Outcomes of Intranasal Orexin Administration in Young and Aged Animals , Coleman Blaine Calva

Interdependent Mechanisms of Stress Susceptibility , Julie Elaine Finnell

Astrocyte Sensitivity to Dopamine in Culture and Ex Vivo , Ashley L. Galloway

Three-Dimensional Plasma Cell Survival Microniche in Multiple Myeloma , Katrina A. Harmon

Role of Epigenome and Microbiome in Endocannabinoid-Mediated Regulation of Inflammation During Diet-Induced Obesity , Kathryn Miranda

Epigenetic and Purinergic Regulation of Mast Cells Mediator Release , Zahraa Abdulmohsin Mohammed

Effect of TCDD, an Environmental Contaminant, on Activation of AHR Leading to Induction of Myeloid Derived Suppressor Cells (MDSCS) and the Ability of Resveratrol, a Botanical, to Neutralize this Effect , Wurood Hantoosh Neamah

An Anatomical Basis of the Differential Cholinergic Modulation of Valence-Specific Pyramidal Neurons in the Basolateral Amygdala , Nguyen Vu

Analysis of Cellular Interactions Within a Collagen Hydrogel , Austin N. Worden

Theses/Dissertations from 2018 2018

Role of Mammary Microenvironment in Promoting Left-Right Differences in Tumor Progression, Metastasis, and Therapeutic Response , Huda Issa Atiya

Enhancements in Alginate Microencapsulation Technology & Impacts on Cell Therapy Development , Marwa Belhaj

Effect Of Resveratrol On The Development Of Eczema , Christopher Carlucci

The Nervous System And Cancers Of The Head And Neck , Christian A. Graves

Turning Up Antitumor Immunity Against Breast Cancer , Johnie Hodge

Exploring Alternative Therapeutic Interventions For The Treatment Of Leigh Syndrome , Stephanie Martin

Regulation Of Prostaglandin D2 And Angiogenesis-Related Factors From Human Skin Mast Cells By Interleukin-6 And Resveratrol , Cody Cody McHale

Advanced Clearing Methods and Imaging Techniques for Optimized Three- Dimensional Reconstruction of Dense Tissues , Caleb A. Padgett

Role Of MIR-489 In HER2 Positive Breast Cancer , Yogin Patel

Operation Of The Leica SP8 Multiphoton Confocal System Using Single Or Multiple Fluorochromes , Amy E. Rowley

Theses/Dissertations from 2017 2017

Garlic Inhibits Inflammation during Dengue Infection , Alex R. Hall

Functional Role of the Homeobox Transcription Factor Six1 in Neoplastic Transformation of Human Keratinocytes , Maria Hosseinipour

Individual Differences in Markers of Cholinergic Signaling Correlating to Fear and Extinction Learning , Grace C. Jones

The Role Of Cyclin-Dependent Kinase 8 In Vascular Disease , Desiree Leach

Succination Impairs Protein Folding and Promotes Chop Stability in the Adipocyte during Diabetes , Allison Manuel

Muscarinic Acetylcholine Receptor M1’s Impact on Fear Extinction Learning , Joshua R. McElroy

Hemodynamic Regulation Of Cardiac Valve Development , Vinal Menon

The Role Of Inflammation In Atherosclerosis , Fatma Saaoud

Synergism of Quercetin and Sodium Butyrate for Controlling Growth of Glioblastoma , Matthew Alan Taylor

Mast Cells and Lipid Cross-Talk in Skin Inflammation , Piper Alexandra Wedman

Theses/Dissertations from 2016 2016

Tumor Suppressor p53 Response To UV Light In Normal Human Keratinocyte Strains From Different Individuals , Fadi Farooq Abboodi

Vitamin D and Stress Fractures in Collegiate and Professional Athletes , Christian Michael Askew

Linking Obesity & Breast Cancer: Role Of Monocyte Chemoattractant Protein-1 And High Fat Diet-Induced Inflammation On Mammary Tumorigenesis , Taryn L. Cranford

The Identification Of The Direct And Indirect Pathways Through Which Leptin Facilitates Synaptic Plasticity In The Hippocampus , Catherine Van Doorn

Morphogenic Effects Of Dopamine In Cultured Rat Hippocampal Astrocytes , Ashley L. Galloway

Emodin Regulates Macrophage Polarization: Application In Breast Cancer Treatment , Stephen Iwanowycz

Differences In Resting-State Functional Connectivity Of Chronic Migraine, With And Without Medication Overuse Headache, And The Effectiveness Of Sphenopalatine Ganglion Block As A Treatment For Repairing Dysfunctional Connectivity. , Kaitlin Krebs

Prospective Assessment Of Health Disparities And Injury Risk Factors At Basic Combat Training At Ft. Jackson , Kristin Lescalleet

Transcriptional And Post-Transcriptional Regulation Of NRF2 In The Heart By The Deubiquitinase CYLD , Bryan J. Mathis

Regulation of Chronic and Acute Inflammatory Disease by microRNA and Microbiota , Pegah Mehrpouya-Bahrami

The Effect of Arsenic on Type 2 Diabetes and Inflammation , Kayla Penta

Factors Influencing The Collagen Fiber Angle Distribution in The Mouse Aorta , Shana Roach Watson

The Role of Epidermal Stem/Progenitor-Like Cells In HPV-Mediated Pre-Neoplastic Transformation , Yvon L. Woappi

Theses/Dissertations from 2015 2015

Extensive Genome Rearrangements of Caulobacter K31 and Genomic Diversity of type B3 Bacteriophages of Caulobacter Crescentus , Kurt Taylor Ash

Evaluating Muscle Fiber Architecture , Morgan Ashley Flahive

Characterization of STARD4 and STARD6 Proteins in Human Ovarian Tissue and Human Granulosa Cells and Cloning of Human STARD4 Transcripts , Aisha Shaaban

Cannabinoid-mediated Epigenetic Regulation of Immune Functions , Jessica Margaret Sido

The Effect of 3D Collagen Scaffolds on Regulating Cellular Responses , Chad Simmons

Theses/Dissertations from 2014 2014

Metformin Arrests Growth and Induces Apoptosis of Neuroblastoma Cells , Nadia Al-Sammarraie

Cellular and Biochemical Effects of Sparstolonin B on Endothelial Cells to Inhibit Angiogenesis , Marwa Belhaj

An Evolutionary Perspective on Infectious and Chronic Disease , John Eberth

Status Epilepticus Induced Alterations in Hippocampal Anatomy and Neurotransmission , Denise K. Grosenbaugh

The Cardio-Protective Effects of Substance P in Both Ischemia/Reperfusion and and Short-Term Hypoxia Rat Models , Shaiban Jubair

MUSCARINIC MODULATION OF BASOLATERAL AMYGDALA , Lei Liu

MCP-1 In Colorectal Cancer: Benefits of Exercise , Jamie Lee McClellan

Diethylstilbestrol (DES) mediates immune suppression via modulation of microRNA expression in mice , Martine Menard

Effects of cPLA-2 on the Migration and Proliferation of Human Vascular Smooth Muscle Cells and the 2-D Migratory Patterns of Tropomyosin in Femoral and Abdominal Aorta Tissue , Jaimeson Thomas Powell

The Role of MicroRNA in Staphylococcal Enterotoxin B-Induced Inflammation and Acute Lung Injury , Roshni Rao

ENHANCING PERIPHERAL OPIOID ANALGESIA: DEVELOPMENT OF VIRAL VECTOR AND SMALL PEPTIDE THERAPIES , Sherika Smith

ROLE OF APELIN AND ENDOTHELIN SYSTEMS IN THE PAIN ASSOCIATED WITH SICKLE CELL DISEASE , Terika Smith

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• Thesis Guidelines

A thesis for Distinction in Biology is a wonderful way for you to close the loop on your undergraduate research experience and showcase your scientific scholarship. Your thesis will be evaluated by the Faculty in Biology and answers the following questions: What did you do? Why did you do it? What is the significance of your results? What else would you do, were you to continue the project?

In answering the above questions, you have an opportunity to demonstrate your understanding and intellectual ownership of a project; not simply your productivity in the lab. The volume of results or completeness of the study is not critical for a successful thesis. Instead, we will be looking for the following:

• An argument for the significance of your research, contextualized within the scientific literature;
• A review of appropriate literature as evidence in support of claims you make in your argument;
• A statement of your research goals, i.e., a meaningful question of biological importance;
• A description of experimental approaches and methods ;
• Appropriate presentation of results through tables, figures, and images;
• A discussion of the meaning and significance of your results;
• A description of limitations and future directions for the project.

Expanded guidelines can be found in the Biology Thesis Assessment Protocol (BioTAP):

Format of the Thesis

The basic format of the thesis should resemble that of any scientific journal article that is common in your subdiscipline. It generally includes the following sections: Introduction & Background; Methods; Results; Discussion; Acknowledgements; and References. In some instances, it may be useful to sub-divide the Methods & Results section to correspond to multiple aims. However, if you chose to take this route, remember that there should still be a general Introduction and Discussion sections that address the project as a whole. The thesis should not consist of several "mini-papers" that are unconnected.  

Submission Guidelines

The format of the final copy should follow these guidelines:

• Cover Page ( sample ): Title; student's name; supervisor's name; date of submission; 3 signature lines at bottom right (Research Supervisor, DUS, Reader). Please follow the format and language of the sample.
• Abstract Page: single-spaced, roughly 250 words.
• Thesis should be double-spaced
• Pages should be numbered at the top right corner of the page
• It is preferred that figures are embedded within the document instead of all at the end
• There is no minimum page requirement or limit, although most are approximately 25 pages. 

Sample Theses

Examples of Distinction papers from previous years are available for examination in the Undergraduate Studies Office (Rm 135 BioSci).  Several samples are also available below as PDF files.

• Tracing the origins of antimalarial resistance in Plasmodium vivax
• Interaction network optimization improves the antimicrobial efficacy of phage cocktails
• Identifying how ufmylation of RAB1B regulates IFN-β signaling

Additional Resources

• Library Resources for Students Writing Theses
• How to write and publish a scientific paper by Barbara Gastel and Robert A. Day
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• Thesis/Dissertation 23
• Arizona--Pima County 1
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Organization (as author)

• Stanford University, Department of Biology 23

%{search_type} search results

23 catalog results, online 1. a predictive model of human transcriptional activators and repressors [2023].

• Liongson, Ivan (Author)
• May 4, 2023

Online 2. A Representative Role for the Alternative Splicing of Synaptic Genes [2023]

• Choeb, Reyan (Author)

Online 3. Building a B Cell Differentiation Model for X-Linked Agammaglobulinemia Using Pluripotent Stem Cells [2023]

• Hernández González, Elaine (Author)
• May 5, 2023

Online 4. Dissecting the Parasympathetic Neural Circuits of the Heart [2023]

• Nguyen, Annie (Author)

Online 5. Early Life Stress Moderates the Relation Between Inflammation and Nucleus Accumbens Gray Matter Volume in Adolescents [2023]

• Jaeger, Emma L. (Author)

Online 6. Identification of DNA Termini in Sequencing Data through Combined Analysis of End Capture and Local Strand Bias [2023]

• Wang, William (Author)

Online 7. Identifying Endocrine Bases of Parental Neglect and Infanticide in the Mimic Poison Frog [2023]

• Lewis, Amaris (Author)

Online 8. Injectable Biomimetic Hydrogels Providing Prolonged Delivery of GLP-1 Analogues for Enhanced Diabetes Treatment [2023]

• Lu, Katie (Author)

Online 9. Internalization of anti-GD2 antibodies as a key component of the antibody-induced cell death mechanism in pediatric neuroblastoma [2023]

• Wang, Alice (Author)

Online 10. Investigating impacts of heat stress on symbiosis in cnidarian larvae using high-throughput fluorescence-based quantification [2023]

• Paul, Maitri (Author)

Online 11. Mechanisms of Ferroptosis Evasion Promoted by Extracellular Metabolites [2023]

• Alchemy, Grace (Author)

Online 12. Morphological Analysis of Axo-Axonic Cell Variability [2023]

• Linker, Lexi (Author)

Online 13. Mosquitoes in the Anthropocene: A Multi-Decade Study at Jasper Ridge Biological Preserve [2023]

• Dutta Gupta, Tanvi (Author)

Online 14. Propagule size has context-dependent effects on colonization success in mixtures of gut microbial communities [2023]

• Goldman, Doran (Author)

Online 15. Spatiotemporal gene expression mapping of brain aging in mice [2023]

• Kedir, Blen (Author)

Online 16. Specific extrusion of Enterovirus-A71-infected cells from human colonoids and consequences for viral spread [2023]

• Craven, Ailsa (Author)

Online 17. Stuck in the Matrix- Patch Matrix Dynamics in Florida Scrub [2023]

• Narasimhan, Sriram (Author)

Online 18. The Junctional Epithelium Organoid: A Novel System for Periodontitis Research [2023]

• Dawid, Isaiah (Author)

Online 19. Using inducible signaling receptors for in vivo fate determination of hematopoietic stem cells to erythroid-specific lineages [2023]

• Majeti, Kiran (Author)

Online 20. We Are What We Eat: The Impact of Agricultural Intensity on the Microbiome of Honeybee Guts [2023]

• Murran, Aisling (Author)
• May 17, 2023

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The Genetics Department offers the choice of “wet” or “dry” projects, which are undertaken in the Lent Term.

Examples of project titles from previous years

• The role of CTCF in imprinted domains.
• Imprinted gene products in lactation and postnatal resource control.
• Maintenance and establishment of DNA methylation at variably methylated regions in early embryos.
• A combined phylogenetic and epigenetic approach to understand domestication of transposable elements in the human genome.
• Control of terminal differentiation in the Drosophila germline.
• Exploring the role of mechanical signals in the specification of the gastrula organizer.
• Connectomics approach to study the role of an unusual pair of neurons in Drosophila learning circuitry.
• Quantitative patterning roles of Prd and Ftz in the Drosophila pair-rule gene network.
• Endoplasmic reticulum (ER) and the axon degeneration disease, hereditary spastic paraplegia.
• Solving the mystery of microtubule organisation in epithelial cell.
• Mechanisms at the interface between cell polarity and the cell cycle.
• TOPBP1 in mitosis.
• Molecular dynamics simulations of protein binding to supercoiled DNA.
• Estimation of mutation rates in Malawi cichlids and small ermine moths.
• Characterising respiratory adenovirus diversity with a novel Nanopore sequencing method.
• The genetic basis of virus resistance in Drosophila.
• Dengue virus evolution.
• Inferring stem cell dynamics from the shape of a single-cell genealogy.
• The long-term consequences of hybridization, or When can we fix heterosis?
• Biofilm Formation in E. coli: Investigating the Tryptophanase-Related Mechanisms.
• Activity of urinary extracellular vesicles against E. coli biofilms.
• Understanding the evolution of flower patterning using transcriptomic approaches.
• Role of flavonols during petal development.

Examples of BBS dissertation titles from previous years

Past topics have included:

• Can we assign a function to 80% of the DNA in the human genome?
• The biology of CRISPR/CAS systems and their uses in eukaryotic genome engineering.
• How can genomic data be used to understand cancer evolution and to assist with cancer therapy?
• How does a cell make a decision to divide – or stop dividing?
• How have bdelloid rotifers avoided sex for so long?
• Discuss the concepts presented in C H Waddington’s 1942 paper in Nature ‘Canalisation of development and the inheritance of acquired characteristics’.
• Transgenerational epigenetic inheritance in mammals - fact or fiction?
• Many human cancers are aneuploid. Yet aneuploidy has detrimental effects on human development and has been shown to reduce cellular fitness : Consider this conundrum.
• Why do endosymbiotic bacteria have small genomes?
• Cell and gene therapy – the future of human monogenic disorders.
• Have regulatory changes been more important for the evolution and divergence of species than changes in protein coding sequence?
• Discuss recent developments in the mechanistic understanding of cell size control.
• Transposable elements and their impact on human health - new opportunities in the era of large scale human genome sequencing.
• Can the bacterial endosymbiont Wolbachia eliminate vector-borne disease?
• Safeguarding genome integrity: DNA damage and repair in heterochromatic domains of eukaryotic genomes.
• Genetic Mechanisms of pattern formation on the surface of plants and animals.
• What can single cell 'omics approaches really tell us about biology?
• Understanding the ability for chikungunya virus to persist endemically in populations .
• How important was the impact of archaic admixture on the human genome?
• How are important are mutations of large effect for adaptation by natural selection?
• What has experimental evolution taught us about how new species arise?

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Dissertation examples

Listed below are some of the best examples of research projects and dissertations from undergraduate and taught postgraduate students at the University of Leeds We have not been able to gather examples from all schools. The module requirements for research projects may have changed since these examples were written. Refer to your module guidelines to make sure that you address all of the current assessment criteria. Some of the examples below are only available to access on campus.

• Undergraduate examples
• Taught Masters examples

BYU ScholarsArchive

Home > Life Sciences > Microbiology and Molecular Biology > Theses and Dissertations

Microbiology and Molecular Biology Theses and Dissertations

Theses/dissertations from 2024 2024.

Characterization of Cellular Metabolism Regulation by the Transcription Factor Centromere Binding Factor 1 (Cbf1) , Spencer Ellsworth

Theses/Dissertations from 2023 2023

Elucidating the Architecture of the TclIJN Complex that Converts Cysteine to Thiazoles in the Biosynthesis of Micrococcin , Diana G. Calvopina Chavez

Manipulating and Assaying Chromatin Architecture Around Enhancer Elements in vivo , John Lawrence Carter

Halophilic Genes that Impact Plant Growth in Saline Soils , Mckay A. Meinzer

Characterizing Stress Granule Regulation by PAS Kinase, Ataxin-2 and Ptc6 and Investigating the Lifespan of Covid-19 Virus on Currency , Colleen R. Newey

Changes in RNA Expression of HuT78 Cells Resulting From the HIV-1 Viral Protein R R77Q Mutation , Joshua S. Ramsey

Theses/Dissertations from 2022 2022

Biofilm Characterization and the Potential Role of eDNA in Horizontal Gene Transfer in Hospital and Meat Isolates of Staphylococcus aureus and Their Biofilms , Ashley Lynne Ball

Novel Patterns for Nucleosome Positioning: From in vitro to in vivo , David Andrew Bates

The Effects of Polymorphisms of Viral Protein R of HIV-1 on the Induction of Apoptosis in Primary Cells and the Characterization of Twelve Novel Bacillus anthracis Bacteriophage , Jacob D. Fairholm

Analysis of the Cytopathogenic Effect of Different HIV-1 Vpr Isoforms on Primary Human CD4+ T Cells and a Model Cell Line , Jonatan Josue Fierro Nieves

The Role of Chitinase A in Mastitis-Associated Escherichia coli Pathogenesis , Weston D. Hutchison

Big Data Meta-Analyses of Transcriptional Responses of Human Samples to Orthohantavirus Infection and Shotgun Metagenomics From Crohn's Disease Patients. , John L. Krapohl

An Exploration of Factors that Impact Uptake of Human Papillomavirus Vaccines , David Samuel Redd

Genomic Analysis and Therapeutic Development of Bacteriophages to Treat Bacterial Infections and Parasitic Infestations , Daniel W. Thompson

The Use of Nucleotide Salvage Pathway Enzymes as Suitable Tumor Targets for Antibody-Based and Adoptive Cell Therapies , Edwin J. Velazquez

Comparative Sequence Analysis Elucidates the Evolutionary Patterns of Yersinia pestis in New Mexico over Thirty-Two Years , M. Elizabeth Warren

Regulation of T Cell Activation by the CD5 Co-Receptor and Altered Peptides, Characterization of Thymidine Kinase-Specific Antibodies, and Integrating Genomics Education in Society , Kiara Vaden Whitley

Theses/Dissertations from 2021 2021

Evolution and Selection: From Suppression of Metabolic Deficiencies to Bacteriophage Host Range and Resistance , Daniel Kurt Arens

Identifying Sinorhizobium meliloti Genes that Determine Fitness Outcomes , Alexander B. Benedict

Pushing the Limits of SARS-CoV-2 Survival: How SARS-CoV-2 Responds to Quaternary Ammonium Compounds and Wastewater , Benjamin Hawthorne Ogilvie

Mutations in HIV-1 Vpr Affect Pathogenesis in T-Lymphocytes and Novel Strategies to Contain the Current COVID-19 Pandemic , Antonio Solis Leal

Theses/Dissertations from 2020 2020

Staphylococcus aureus Metal Acquisition in Milk and Mammary Gland Tissue , Shalee Killpack Carlson

Antimicrobial Peptide Development: From Massively Parallel Peptide Sequencing to Bioinformatic Motif Identification , Alexander K. Erikson

A Comparison of Chikungunya Virus Infection, Dissemination, and Cytokine Induction in Human and Murine Macrophages and Characterization of RAG2-/-γc-/- Mice as an Animal Model to Study Neurotropic Chikungunya Disease , Israel Guerrero

The Effects of Immune Regulation and Dysregulation: Helper T Cell Receptor Affinity, Systemic Lupus Erythematosus and Cancer Risk, and Vaccine Hesitancy , Deborah K. Johnson

Identification of Genes that Determine Fitness, Virulence, and Disease Outcomes in Mastitis Associated Eschericia coli , Michael Andrew Olson

Theses/Dissertations from 2019 2019

Investigation of Thymidine Kinase 1 in Cancer Progression , Eliza Esther King Bitter

Ribosomally Synthesized and Post-Translationally Modified Peptides as Potential Scaffolds for Peptide Engineering , Devan Bursey

Bioaerosols Associated with Evaporative Cooler Use in Low-Income Homes in Semi-Arid Climates , Ashlin Elaine Cowger

PAS Kinase and TOR, Controllers of Cell Growth and Proliferation , Brooke Jasmyn Cozzens

Regulation of Immune Cell Activation and Functionby the nBMPp2 Protein andthe CD5 Co-Receptor , Claudia Mercedes Freitas

Characterizing Novel Pathways for Regulation and Function of Ataxin-2 , Elise Spencer Melhado

Interactions Between the Organellar Pol1A, Pol1B, and Twinkle DNA Replication Proteins and Their Role in Plant Organelle DNA Replication , Stewart Anthony Morley

SNFing Glucose to PASs Mitochondrial Dysfunction: The Role of Two Sensory Protein Kinases in Metabolic Diseases , Kai Li Ong

Characterizing the Function of PAS kinase in Cellular Metabolism and Neurodegenerative Disease , Jenny Adele Pape

Isolation, Characterization, and Genomic Comparison of Bacteriophages of Enterobacteriales Order , Ruchira Sharma

Isolation, Genetic Characterization and Clinical Application of Bacteriophages of Pathogenic Bacterial Species , Trever Leon Thurgood

Investigation of Therapeutic Immune Cell Metabolism , Josephine Anna Tueller

Theses/Dissertations from 2018 2018

Innate Immune Cell Phenotypes Are Dictated by Distinct Epigenetic Reprogramming , Kevin Douglas Adams

Bacteriophages for Treating American Foulbrood and the Neutralization of Paenibacillus larvae Spores , Thomas Scott Brady

Methods for Detection of and Therapy for Carbapenem-Resistant Enterobacteriaceae , Olivia Tateoka Brown

The Diversity Found Among Carbapenem-Resistant Bacteria , Galen Edward Card

Exploration of Antimicrobial Activity in Natural Peptides and High-Throughput Discovery of Synthetic Peptides , Emma Kay Dallon

Gut Microbiota Regulates the Interplay Between Diet and Genetics to Influence Insulin Resistance , Jeralyn Jones Franson

The Antimicrobial Properties of Honey and Their Effect on Pathogenic Bacteria , Shreena Himanshu Mody

The Ability of Novel Phage to Infect Virulent Bacillus anthracis Isolates , Hyrum Smith Shumway

Galleria Mellonella as an Alternate Infection Model for Burkholderia Species and a Comparison of Suspension and Surface Test Methods for Evaluating Sporicidal Efficacy , Joseph D. Thiriot

The Clinical Significance of HPRT as a Diagnostic and Therapeutic Biomarker for Hematological and Solid Malignancies , Michelle Hannah Townsend

Biomarker Analysis and Clinical Relevance of Thymidine Kinase 1 in Solid and Hematological Malignancies , Evita Giraldez Weagel

Hospital and meat associated Staphylococcus aureus and Their Biofilm Characteristics , Trevor Michael Wienclaw

Theses/Dissertations from 2017 2017

Comparison of Cytokine Expression and Bacterial Growth During Periparturient and Mid Lactation Mastitis in a Mouse Model , Rhonda Nicole Chronis

Influence of Epstein-Barr Virus on Systemic Lupus Erythematosus Disease Development and the Role of Depression on Disease Progression , Caleb Cornaby

The Effects of Nucleosome Positioning and Chromatin Architecture on Transgene Expression , Colton E. Kempton

Phosphate Signaling Through Alternate Conformations of the PstSCAB Phosphate Transporter , Ramesh Krishna Vuppada

Acetobacter fabarum Genes Influencing Drosophila melanogaster Phenotypes , Kylie MaKay White

Theses/Dissertations from 2016 2016

The Path to Understanding Salt Tolerance: Global Profiling of Genes Using Transcriptomics of the Halophyte Suaeda fruticosa , Joann Diray Arce

Genetic and Biochemical Analysis of the Micrococcin Biosynthetic Pathway , Philip Ross Bennallack

Characterizing Interaction Between PASK and PBP1/ ATXN2 to Regulate Cell Growth and Proliferation , Nidhi Rajan Choksi

The Activity of Alkaline Glutaraldehyde Against Bacterial Endospores and Select Non-Enveloped Viruses , Justen Thalmus Despain

The Role of Viral Interleukin-6 in Tumor Development of Kaposi's Sarcoma-Associated Herpesvirus Lymphomas , Rebecca A. Fullwood

The Role of the Transcriptional Antiterminator RfaH in Lipopolysaccharide Synthesis, Resistance to Antimicrobial Peptides, and Virulence of Yersinia pseudotuberculosis and Yersinia pestis , Jared Michael Hoffman

A CryAB Interactome Reveals Clientele Specificity and Dysfunction of Mutants Associated with Human Disease , Whitney Katherine Hoopes

The pmrHFIJKLM Operon in Yersinia pseudotuberculosis Enhances Resistance to CCL28 and Promotes Phagocytic Engulfment by Neutrophils , Lauren Elizabeth Johnson

Characterization of Five Brevibacillus Bacteriophages and Their Genomes , Michael Allen Sheflo

Analysis of Nucleosome Isolation and Recovery: From In Silico Invitrosomes to In Vivo Nucleosomes , Collin Brendan Skousen

Human Herpesvirus 6A Infection and Immunopathogenesis in Humanized Rag2 -/-γc-/- Mice and Relevance to HIV/AIDS and Autoimmunity , Anne Tanner

Theses/Dissertations from 2015 2015

Identifying and Characterizing Yeast PAS Kinase 1 Substrates Reveals Regulation of Mitochondrial and Cell Growth Pathways , Desiree DeMille

The Detection and Molecular Evolution of Francisella tularensis Subspecies , Mark K. Gunnell

Isolation and Host Range of Staphylococcus aureus Bacteriophages and Use for Decontamination of Fomites , Kyle C. Jensen

The Antioxidant and DNA Repair Capacities of Resveratrol, Piceatannol, and Pterostilbene , Justin Ryan Livingston

High Salinity Stabilizes Bacterial Community Composition and Activity Through Time , Tylan Wayne Magnusson

Advancing Phage Genomics and Honeybee Health Through Discovery and Characterization of Paenibacillaceae Bacteriophages , Bryan Douglas Merrill

Specialized Replication Operons Control Rhizobial Plasmid Copy Number in Developing Symbiotic Cells , Clarice Lorraine Perry

Gene Networks Involved in Competitive Root Colonization and Nodulation in the Sinorhizobium meliloti-Medicago truncatula Symbiosis , Ryan D. VanYperen

Theses/Dissertations from 2014 2014

Snf1 Mediated Phosphorylation and Activation of PAS Kinase , Bryan D. Badal

Studies of PhoU in Escherichia coli: Metal Binding, Dimerization,Protein/Protein Interactions, and a Signaling Complex Model , Stewart G. Gardner

Pharmacologic Immunomodulation of Macrophage Activation by Caffeine , Ryan Perry Steck

Analysis of Nucleosome Mobility, Fragility, and Recovery: From Embryonic Stem Cells to Invitrosomes , Ashley Nicolle Wright

Enhancing Protein and Enzyme Stability Through Rationally Engineered Site-Specific Immobilization Utilizing Non-Canonical Amino Acids , Jeffrey Chun Wu

Theses/Dissertations from 2013 2013

Thymidine Kinase 1: Diagnostic and Prognostic Significance in Malignancy , Melissa Marie Alegre

Promoter Polymorphisms in Interferon Regulatory Factor 5 , Daniel N. Clark

Modulators of Symbiotic Outcome in Sinorhizobium meliloti , Matthew B. Crook

Evidences for Protein-Protein Interactions Between PstB and PhoU in the Phosphate Signaling Complex of Escherichia coli , Kristine Dawn Johns

Identification of the Binding Partners for HspB2 and CryAB Reveals Myofibril and Mitochondrial Protein Interactions and Non-Redundant Roles for Small Heat Shock Proteins , Kelsey Murphey Langston

A Quadruplex Real-Time PCR Assay for the Rapid Detection and Differentiation of the Burkholderia pseudomallei Complex: B. mallei , B. pseudomallei , and B. thailandensis , Chinn-woan Lowe

The Role of Nuclear BMP2 in the Cell Cycle and Tumorigenesis , Brandt Alan Nichols

Nuclear BMP2 and the Immune Response , Daniel S. Olsen

Hypersaline Lake Environments Exhibit Reduced Microbial Dormancy , Joshua Christopher Vert

Theses/Dissertations from 2012 2012

Characterization of the Cellular and Organellar Dynamics that Occur with a Partial Depletion of Mitochondrial DNA when Arabidopsis Organellar DNA Polymerase IB is Mutated , John D. Cupp

Effect of Antioxidants and Oxidative Stress on Different Cancer Cell Types , Gaytri Devi Gupta Elera

Effects of Chemical Stimulation and Tumor Co-Incubation on Macrophage Activation and Aggressiveness, Measured Through Phagocytosis and Respiratory Burst , Bo Marcus Gustafsson

Loss of the Lipopolysaccharide Core Biosynthesis rfaD Gene Increases Antimicrobial Chemokine Binding and Bacterial Susceptibility to CCL28 and Polymyxin: A Model for Understanding the Interface of Antimicrobial Chemokines and Bacterial Host Defense Avoidance Mechanisms , Cynthia S. Lew

Partial Characterization of the Antimicrobial Activity of CCL28 , Bin Liu

Characterizing the Role of HspB2 in Cardiac Metabolism and Muscle Structure Using Yeast and Mammalian Systems , Jonathan Paul Neubert

Humanized Mice as a Model to Study Human Viral Pathogenesis and Novel Antiviral Drugs , Freddy Mauricio Sanchez Tumbaco

Transgene Delivery via Microelectromechanical Systems , Aubrey Marie Mueller Wilson

Theses/Dissertations from 2011 2011

Antioxidants in Cancer Research and Prevention: Assay Comparison, Structure-Function Analysis, and Food Product Analysis , Andrew Robert Garrett

Characterization of the Role Nuclear Bmp2 (nBmp2) Plays in Regulating Gene Expression , Fialka Grigorova

Theses/Dissertations from 2010 2010

Effects of Diabetic State and Gender on Pro-Inflammatory Cytokine Secretion by Human Macrophages Infected with Burkholderia pseudomallei , Annette J. Blam

Organellar DNA Polymerases Gamma I and II in Arabidopsis thaliana , Jeffrey M. Brammer

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Biomedical Science BSc: IMDSCI399 Dissertation

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Senior thesis examples.

Graduating seniors in Biological Sciences have the option of submitting a senior thesis for consideration for Honors and Research Prizes .  Below are some examples of particularly outstanding theses from recent years (pdf):

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Digital Commons @ USF > College of Marine Science > Theses and Dissertations

Marine Science Theses and Dissertations

Theses/dissertations from 2023 2023.

Environmental chemical analysis method optimization and application to northwest Cuban marine sediment , Thea R. Bartlett

Exploring the Impact of Eddies on Southern Ocean Biogeochemical Structure using BGC-Argo Float Observations , Nicola J. Guisewhite

Meta-Analysis of United States Seabird Populations Based on Ocean Biodiversity Information System (OBIS) Records (1965–2018) , Savannah Hartman

Stable Isotopic Investigation of the Hydrological Cycle of West-Central Florida , Toedsit Netratanawong

Examining paleoshorelines in the eastern Gulf of Mexico: Insights on sea level history and potential areas of interest for habitat management , Catalina Rubiano

Stable Isotope Analysis on Yellowfin and Blackfin Tuna Eye Lenses Reveals Life History Patterns in the Gulf of Mexico , Kylee M. Rullo

Stable Isotope Analysis of Doryteuthis (Amerigo) pealeii Eye Lenses to Determine Migratory Patterns in the Eastern Gulf of Mexico Using Statoliths for Age Determination , Hannah M. Schwaiger

Theses/Dissertations from 2022 2022

The effects of temperature and oxygen availability on aerobic performance in three coastal shark species; Squalus acanthias, Carcharhinus limbatus, and Carcharhinus leucas , Alyssa M. Andres

Continuous Effort Required to Maintain Populations of Outplanted Acropora cervicornis in the Florida Reef Tract, USA , Tiffany S. Boisvert

Elucidating the Sources Supplying Aerosol Iron, Zinc, and Cadmium to the Surface of the North Pacific Ocean with Stable Isotopes , Zach B. Bunnell

Quantifying Environmental Sensitivity of Marine Resources to Oil Well Blowouts in the Gulf of Mexico , Emily Chancellor

Zooplankton Biodiversity in the Northeast Gulf of Mexico and on the West Florida Shelf from 2005 - 2014 , Megan Ferguson

Coupling 210 Pb and 14 C to constrain carbon burial efficiency of blue carbon ecosystems , Tynisha R. Martin

Empirical and Modeled δ13C and δ15N Isoscapes in the Gulf of Mexico and their Application to Fish Eye Lens Migration Studies , Brianna Michaud

Interactions between juvenile estuary-dependent fishes and microalgal dynamics , Ian C. Williams

Theses/Dissertations from 2021 2021

Metabolic Rate, Critical Oxygen Partial Pressure, and Oxygen Supply Capacity of Farfantepenaeus duorarum at their Lower Thermal Limit , Alexandra L. Burns

From River to Sea: Improving Carbon System Measurement Methods for use in Rivers, Estuaries, and Oceans , Ellie Hudson-Heck

Riverine and Estuarine CO2-System Studies on the West Coast of Florida , Christopher S. Moore

Past Ice-Ocean Interactions on the Sabrina Coast shelf, East Antarctica: Deglacial to Recent Paleoenvironmental Insights from Marine Sediments , Kara J. Vadman

Investigating the Recent History of a Changing Planet with Innovative Isotopic Techniques and New Geologic Archives , Ryan A. Venturelli

Theses/Dissertations from 2020 2020

Testing the Efficacy of Recompression Tools to Reduce the Discard Mortality of Reef Fishes in the Gulf of Mexico , Oscar E. Ayala

Polychlorinated Biphenyls, Organochlorine Pesticides, and Polycyclic Aromatic Hydrocarbons in Snapper (Family Lutjanidae) from Cuba and the Wider Gulf of Mexico , Brigid E. Carr

A Health Evaluation of Gulf of Mexico Golden Tilefish (Lopholatilus chamaeleonticeps) and Red Snapper (Lutjanus campechanus) Following the Deepwater Horizon Oil Spill , Kristina Leigh Deak

A Process-based Approach to Evaluating the Role of Organic Ligands in Trace Metal Cycling in the Marine Environment , Travis Mellett

Investigation of Retention Versus Export of Planktonic Fish Eggs in the Northeastern Gulf of Mexico , Bich Vi Viviane Nguyen

Development of a Benthic Foraminifera Based Marine Biotic Index (Foram-AMBI) for the Gulf of Mexico: a Decision Support Tool , Bryan O'Malley

Plio-Pleistocene Antarctic Ice-Ocean Interactions in the Ross Sea , Catherine Prunella

Mechanisms of Carbon Movement and Stabilization in Mangrove Wetlands , Carey Schafer

Hepatobiliary Polycyclic Aromatic Hydrocarbons in Pelagic Fishes of the Gulf of Mexico , Madison R. Schwaab

Analytical Methods and Critical Analyses Supporting Thermodynamically Consistent Characterizations of the Marine CO 2 System , Jonathan D. Sharp

Large Thecosome Pteropods of the Northern Gulf of Mexico: Species Abundance, Spatial and Vertical Distribution With a Temporal Comparison of Shell Thickness , Sarah M. Shedler

Polycyclic Aromatic Hydrocarbon Exposure, Hepatic Accumulation, and Associated Health Impacts in Gulf of Mexico Tilefish (Lopholatilus chamaeleonticeps) , Susan M. Snyder

Investigating the Isotope Signatures of Dissolved Iron in the Southern Atlantic Ocean , Brent A. Summers

Modeling Early Life: Ontogenetic Growth and Behavior Affect Population Connectivity in Gulf of Mexico Marine Fish , Kelly Vasbinder

Isotope-Based Methods for Evaluating Fish Trophic Geographies , Julie L. Vecchio

Theses/Dissertations from 2019 2019

Use of Spectrofluorometry to Detect Petroleum Hydrocarbons in the Marine Environment , Mary Iris Abercrombie

Can Florida's Springs Coast provide a Potential Refuge for Calcifying Organisms? Evidence from Benthic Foraminifera , Kyle E. Amergian

Iron-Virus Interactions: Development and Testing of the Ferrojan Horse Hypothesis , Chelsea Bonnain

DNA Barcoding of Fish Eggs in the Gulf of Mexico , Makenzie Burrows

Ecological Responses of Seascape Heterogeneity , Dinorah H. Chacin

Species Abundance, Spatial and Vertical Distributionsof Large Heteropods (Pterotracheidae and Carinariidae)in the Northern Gulf of Mexico , Kristine A. Clark

Zooplankton Community Structure in the NE Gulf of Mexico: Impacts of Environmental Variability and the Deepwater Horizon Oil Spill , Kate M. Dubickas

Life History Through the Eyes of a Hogfish: Evidence of Trophic Growth and Differential Juvenile Habitat Use , Meaghan E. Faletti

Population Demographics of Golden Tilefish Lopholatilus chamaeleonticeps in the Gulf of Mexico , Greta J. Helmueller

Regeneration of Trace Metals During Phytoplankton Decay: An Experimental Study , Adrienne P. Hollister

Estimating Coastal Water Turbidity Using VIIRS Nighttime Measurement , Chih-Wei Huang

Untapped Potential of Gorgonian Octocorals for Detecting Environmental Change in Biscayne National Park, Florida, USA , Selena A. Kupfner Johnson

High-Resolution Investigation of Event Driven Sedimentation: Response and Evolution of the Deepwater Horizon Blowout in the Sedimentary System , Rebekka A. Larson

Variations of Sedimentary Biogenic silica in the Gulf of Mexico during the Deepwater Horizon and IXTOC-I Oil Spill. , Jong Jin Lee

Variations of Global Ocean Salinity from Multiple Gridded Argo Products , Chao Liu

Fish Communities on Natural and Artificial Reefs in the Eastern Gulf of Mexico , Elizabeth C. Viau

Reconstructing Geographic and Trophic Histories of Fish Using Bulk and Compound-Specific Stable Isotopes from Eye Lenses , Amy A. Wallace

Studies of the Long-term Change of Global Mean and Regional Sea Surface Height , Yingli Zhu

Theses/Dissertations from 2018 2018

Ecophysiology of Oxygen Supply in Cephalopods , Matthew A. Birk

Remote Estimation of Surface Water p CO 2 in the Gulf of Mexico , Shuangling Chen

Spatial Dynamics and Productivity of a Gulf of Mexico Commercial Reef Fish Fishery Following Large Scale Disturbance and Management Change , Marcy Lynn Cockrell

Quantifying the Probability of Lethal Injury to Florida Manatees Given Characteristics of Collision Events. , B. Lynn Combs

Diversity of ssDNA Phages Related to the Family Microviridae within the Ciona robusta Gut , Alexandria Creasy

Use of a Towed Camera System along the west Florida shelf: A Case Study of the Florida Middle Grounds Benthic Marine Communities , Katie S. Davis

Using Ecosystem-Based Modeling to Describe an Oil Spill and Assess the Long-Term Effects , Lindsey N. Dornberger

Extending Spectrophotometric pHT Measurements in Coastal and Estuarine Environments , Nora Katherine Douglas

Evaluating the use of larval connectivity information in fisheries models and management in the Gulf of Mexico , Michael Drexler

An Interdisciplinary Approach to Understanding Predator-Prey Relationships in a Changing Ocean: From System Design to Education , Ileana M. Freytes-Ortiz

Application of Image Recognition Technology to Foraminiferal Assemblage Analyses , Christian Helmut Gfatter

Evaluation of trace-metal and isotopic records as techniques for tracking lifetime movement patterns in fishes , Jennifer E. Granneman

The Stability of Sand Waves in a Tidally-Influenced Shipping Channel, Tampa Bay, Florida , John Willis Gray

Application of Modern Foraminiferal Assemblages to Paleoenvironmental Reconstruction: Case Studies from Coastal and Shelf Environments , Christian Haller

Integrating Towed Underwater Video with Multibeam Acoustics for Mapping Benthic Habitat and Assessing Reef Fish Communities on the West Florida Shelf , Alexander Ross Ilich

Evaluating Beach Water Quality and Dengue Fever Risk Factors by Satellite Remote Sensing and Artificial Neural Networks , Abdiel Elias Laureano-Rosario

Microbial Associations of Four Species of Algal Symbiont-Bearing Foraminifera from the Florida Reef Tract, USA , Makenna May Martin

Environmental controls on the geochemistry of Globorotalia truncatulinoides in the Gulf of Mexico: Implications for paleoceanographic reconstructions , Caitlin Elizabeth Reynolds

Dormancy in the Amphistegina gibbosa Holobiont: Ecological and Evolutionary Implications for the Foraminifera , Benjamin J. Ross

Optical Remote Sensing of Oil Spills in the Gulf of Mexico , Shaojie Sun

Spatial and Temporal Distributions of Pelagic Sargassum in the Intra-Americas Sea and Atlantic Ocean , Mengqiu Wang

Theses/Dissertations from 2017 2017

Packaging of Genetic Material by Gene Transfer Agents (GTAs) Produced by Marine Roseobacter Species and Their Effect on Stimulating Bacterial Growth , Shahd Bader Aljandal

Spatio-temporal Dynamics of Soil Composition and Accumulation Rates in Mangrove Wetlands , Joshua L. Breithaupt

Characterizing Benthic Habitats Using Multibeam Sonar and Towed Underwater Video in Two Marine Protected Areas on the West Florida Shelf, USA , Jennifer L. Brizzolara

Latitudinal Position and Trends of the Intertropical Convergence Zone (ITCZ) and its Relationship with Upwelling in the Southern Caribbean Sea and Global Climate Indices , Kaitlyn E. Colna

Calibration-free Spectrophotometric Measurements of Carbonate Saturation States in Seawater , Erin E. Cuyler

Viruses in marine animals: Discovery, detection, and characterizarion , Elizabeth Fahsbender

Quantity Trumps Quality: Bayesian Statistical Accumulation Modeling Guides Radiocarbon Measurements to Construct a Chronology in Real-time , Devon Robert Firesinger

Characterizing Gross Lesions in Corals on Fringing Reefs of Taiwan and Hainan Island, China , Adrienne George

Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary , Megan E. Hepner

Investigating Marine Resources in the Gulf of Mexico at Multiple Spatial and Temporal Scales of Inquiry , Joshua Paul Kilborn

Southern Ocean Transport by Combining Satellite Altimetry and Temperature/Salinity Profile Data , Michael Kosempa

Role of viruses within metaorganisms: Ciona intestinalis as a model system , Brittany A. Leigh

Evaluating satellite and supercomputing technologies for improved coastal ecosystem assessments , Matthew James Mccarthy

Stable Isotopes in the Eye Lenses of Doryteuthis plei: Exploring Natal Origins and Migratory Patterns in the Eastern Gulf of Mexico , Brenna A. Meath

Genetic Identification and Population Characteristics of Deep-Sea Cephalopod Species in the Gulf of Mexico and Northwestern Atlantic Ocean , Amanda Sosnowski

Investigation of Sediment Ridges Using Bathymetry and Backscatter near Clearwater, Florida , Lewis Stewart

Resolving chronological and temperature constraints on Antarctic deglacial evolution through improved dating methodology , Cristina Subt

Subtropical benthos vary with reef type, depth, and grazing intensity , Kara R. Wall

Theses/Dissertations from 2016 2016

Diversity and Distribution of Diatom Endosymbionts in Amphistegina spp. (Foraminifera) Based on Molecular and Morphological Techniques , Kwasi H. Barnes

Abundance of Archaias angulatus on the West Florida Coast Indicates the Influence of Carbonate Alkalinity over Salinity , Sean Thomas Beckwith

Resource Use Overlap in a Native Grouper and Invasive Lionfish , Joseph Schmidt Curtis

Miocene Contourite Deposition (along-slope) near DeSoto Canyon, Gulf of Mexico: A Product of an Enhanced Paleo-Loop Current , Shane Christopher Dunn

Trophic Ecology and Habitat Use of Atlantic Tarpon ( Megalops atlanticus ) , Benjamin Neal Kurth

Characterization of Bacterial Diversity in Cold-Water Anthothelidae Corals , Stephanie Nichole Lawler

Whiting Events Off Southwest Florida: Remote Sensing and Field Observations , Jacqueline Long

Pollutants and Foraminiferal Assemblages in Torrecillas Lagoon: An Environmental Micropaleontology Approach , Michael Martinez-Colon

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Dissertation Structure & Layout 101: How to structure your dissertation, thesis or research project.

By: Derek Jansen (MBA) Reviewed By: David Phair (PhD) | July 2019

So, you’ve got a decent understanding of what a dissertation is , you’ve chosen your topic and hopefully you’ve received approval for your research proposal . Awesome! Now its time to start the actual dissertation or thesis writing journey.

To craft a high-quality document, the very first thing you need to understand is dissertation structure . In this post, we’ll walk you through the generic dissertation structure and layout, step by step. We’ll start with the big picture, and then zoom into each chapter to briefly discuss the core contents. If you’re just starting out on your research journey, you should start with this post, which covers the big-picture process of how to write a dissertation or thesis .

*The Caveat *

In this post, we’ll be discussing a traditional dissertation/thesis structure and layout, which is generally used for social science research across universities, whether in the US, UK, Europe or Australia. However, some universities may have small variations on this structure (extra chapters, merged chapters, slightly different ordering, etc).

So, always check with your university if they have a prescribed structure or layout that they expect you to work with. If not, it’s safe to assume the structure we’ll discuss here is suitable. And even if they do have a prescribed structure, you’ll still get value from this post as we’ll explain the core contents of each section.  

Overview: S tructuring a dissertation or thesis

• Acknowledgements page
• Abstract (or executive summary)
• Table of contents , list of figures and tables
• Chapter 1: Introduction
• Chapter 2: Literature review
• Chapter 3: Methodology
• Chapter 4: Results
• Chapter 5: Discussion
• Chapter 6: Conclusion
• Reference list

As I mentioned, some universities will have slight variations on this structure. For example, they want an additional “personal reflection chapter”, or they might prefer the results and discussion chapter to be merged into one. Regardless, the overarching flow will always be the same, as this flow reflects the research process , which we discussed here – i.e.:

• The introduction chapter presents the core research question and aims .
• The literature review chapter assesses what the current research says about this question.
• The methodology, results and discussion chapters go about undertaking new research about this question.
• The conclusion chapter (attempts to) answer the core research question .

In other words, the dissertation structure and layout reflect the research process of asking a well-defined question(s), investigating, and then answering the question – see below.

To restate that – the structure and layout of a dissertation reflect the flow of the overall research process . This is essential to understand, as each chapter will make a lot more sense if you “get” this concept. If you’re not familiar with the research process, read this post before going further.

Right. Now that we’ve covered the big picture, let’s dive a little deeper into the details of each section and chapter. Oh and by the way, you can also grab our free dissertation/thesis template here to help speed things up.

The title page of your dissertation is the very first impression the marker will get of your work, so it pays to invest some time thinking about your title. But what makes for a good title? A strong title needs to be 3 things:

• Succinct (not overly lengthy or verbose)
• Specific (not vague or ambiguous)
• Representative of the research you’re undertaking (clearly linked to your research questions)

Typically, a good title includes mention of the following:

• The broader area of the research (i.e. the overarching topic)
• The specific focus of your research (i.e. your specific context)
• Indication of research design (e.g. quantitative , qualitative , or  mixed methods ).

For example:

A quantitative investigation [research design] into the antecedents of organisational trust [broader area] in the UK retail forex trading market [specific context/area of focus].

Again, some universities may have specific requirements regarding the format and structure of the title, so it’s worth double-checking expectations with your institution (if there’s no mention in the brief or study material).

Acknowledgements

This page provides you with an opportunity to say thank you to those who helped you along your research journey. Generally, it’s optional (and won’t count towards your marks), but it is academic best practice to include this.

So, who do you say thanks to? Well, there’s no prescribed requirements, but it’s common to mention the following people:

• Your dissertation supervisor or committee.
• Any professors, lecturers or academics that helped you understand the topic or methodologies.
• Any tutors, mentors or advisors.
• Your family and friends, especially spouse (for adult learners studying part-time).

There’s no need for lengthy rambling. Just state who you’re thankful to and for what (e.g. thank you to my supervisor, John Doe, for his endless patience and attentiveness) – be sincere. In terms of length, you should keep this to a page or less.

Abstract or executive summary

The dissertation abstract (or executive summary for some degrees) serves to provide the first-time reader (and marker or moderator) with a big-picture view of your research project. It should give them an understanding of the key insights and findings from the research, without them needing to read the rest of the report – in other words, it should be able to stand alone .

For it to stand alone, your abstract should cover the following key points (at a minimum):

• Your research questions and aims – what key question(s) did your research aim to answer?
• Your methodology – how did you go about investigating the topic and finding answers to your research question(s)?
• Your findings – following your own research, what did do you discover?
• Your conclusions – based on your findings, what conclusions did you draw? What answers did you find to your research question(s)?

So, in much the same way the dissertation structure mimics the research process, your abstract or executive summary should reflect the research process, from the initial stage of asking the original question to the final stage of answering that question.

In practical terms, it’s a good idea to write this section up last , once all your core chapters are complete. Otherwise, you’ll end up writing and rewriting this section multiple times (just wasting time). For a step by step guide on how to write a strong executive summary, check out this post .

Need a helping hand?

Table of contents

This section is straightforward. You’ll typically present your table of contents (TOC) first, followed by the two lists – figures and tables. I recommend that you use Microsoft Word’s automatic table of contents generator to generate your TOC. If you’re not familiar with this functionality, the video below explains it simply:

If you find that your table of contents is overly lengthy, consider removing one level of depth. Oftentimes, this can be done without detracting from the usefulness of the TOC.

Right, now that the “admin” sections are out of the way, its time to move on to your core chapters. These chapters are the heart of your dissertation and are where you’ll earn the marks. The first chapter is the introduction chapter – as you would expect, this is the time to introduce your research…

It’s important to understand that even though you’ve provided an overview of your research in your abstract, your introduction needs to be written as if the reader has not read that (remember, the abstract is essentially a standalone document). So, your introduction chapter needs to start from the very beginning, and should address the following questions:

• What will you be investigating (in plain-language, big picture-level)?
• Why is that worth investigating? How is it important to academia or business? How is it sufficiently original?
• What are your research aims and research question(s)? Note that the research questions can sometimes be presented at the end of the literature review (next chapter).
• What is the scope of your study? In other words, what will and won’t you cover ?
• How will you approach your research? In other words, what methodology will you adopt?
• How will you structure your dissertation? What are the core chapters and what will you do in each of them?

These are just the bare basic requirements for your intro chapter. Some universities will want additional bells and whistles in the intro chapter, so be sure to carefully read your brief or consult your research supervisor.

If done right, your introduction chapter will set a clear direction for the rest of your dissertation. Specifically, it will make it clear to the reader (and marker) exactly what you’ll be investigating, why that’s important, and how you’ll be going about the investigation. Conversely, if your introduction chapter leaves a first-time reader wondering what exactly you’ll be researching, you’ve still got some work to do.

Now that you’ve set a clear direction with your introduction chapter, the next step is the literature review . In this section, you will analyse the existing research (typically academic journal articles and high-quality industry publications), with a view to understanding the following questions:

• What does the literature currently say about the topic you’re investigating?
• Is the literature lacking or well established? Is it divided or in disagreement?
• How does your research fit into the bigger picture?
• How does your research contribute something original?
• How does the methodology of previous studies help you develop your own?

Depending on the nature of your study, you may also present a conceptual framework towards the end of your literature review, which you will then test in your actual research.

Again, some universities will want you to focus on some of these areas more than others, some will have additional or fewer requirements, and so on. Therefore, as always, its important to review your brief and/or discuss with your supervisor, so that you know exactly what’s expected of your literature review chapter.

Now that you’ve investigated the current state of knowledge in your literature review chapter and are familiar with the existing key theories, models and frameworks, its time to design your own research. Enter the methodology chapter – the most “science-ey” of the chapters…

In this chapter, you need to address two critical questions:

• Exactly HOW will you carry out your research (i.e. what is your intended research design)?
• Exactly WHY have you chosen to do things this way (i.e. how do you justify your design)?

Remember, the dissertation part of your degree is first and foremost about developing and demonstrating research skills . Therefore, the markers want to see that you know which methods to use, can clearly articulate why you’ve chosen then, and know how to deploy them effectively.

Importantly, this chapter requires detail – don’t hold back on the specifics. State exactly what you’ll be doing, with who, when, for how long, etc. Moreover, for every design choice you make, make sure you justify it.

In practice, you will likely end up coming back to this chapter once you’ve undertaken all your data collection and analysis, and revise it based on changes you made during the analysis phase. This is perfectly fine. Its natural for you to add an additional analysis technique, scrap an old one, etc based on where your data lead you. Of course, I’m talking about small changes here – not a fundamental switch from qualitative to quantitative, which will likely send your supervisor in a spin!

You’ve now collected your data and undertaken your analysis, whether qualitative, quantitative or mixed methods. In this chapter, you’ll present the raw results of your analysis . For example, in the case of a quant study, you’ll present the demographic data, descriptive statistics, inferential statistics , etc.

Typically, Chapter 4 is simply a presentation and description of the data, not a discussion of the meaning of the data. In other words, it’s descriptive, rather than analytical – the meaning is discussed in Chapter 5. However, some universities will want you to combine chapters 4 and 5, so that you both present and interpret the meaning of the data at the same time. Check with your institution what their preference is.

Now that you’ve presented the data analysis results, its time to interpret and analyse them. In other words, its time to discuss what they mean, especially in relation to your research question(s).

What you discuss here will depend largely on your chosen methodology. For example, if you’ve gone the quantitative route, you might discuss the relationships between variables . If you’ve gone the qualitative route, you might discuss key themes and the meanings thereof. It all depends on what your research design choices were.

Most importantly, you need to discuss your results in relation to your research questions and aims, as well as the existing literature. What do the results tell you about your research questions? Are they aligned with the existing research or at odds? If so, why might this be? Dig deep into your findings and explain what the findings suggest, in plain English.

The final chapter – you’ve made it! Now that you’ve discussed your interpretation of the results, its time to bring it back to the beginning with the conclusion chapter . In other words, its time to (attempt to) answer your original research question s (from way back in chapter 1). Clearly state what your conclusions are in terms of your research questions. This might feel a bit repetitive, as you would have touched on this in the previous chapter, but its important to bring the discussion full circle and explicitly state your answer(s) to the research question(s).

Next, you’ll typically discuss the implications of your findings? In other words, you’ve answered your research questions – but what does this mean for the real world (or even for academia)? What should now be done differently, given the new insight you’ve generated?

Lastly, you should discuss the limitations of your research, as well as what this means for future research in the area. No study is perfect, especially not a Masters-level. Discuss the shortcomings of your research. Perhaps your methodology was limited, perhaps your sample size was small or not representative, etc, etc. Don’t be afraid to critique your work – the markers want to see that you can identify the limitations of your work. This is a strength, not a weakness. Be brutal!

This marks the end of your core chapters – woohoo! From here on out, it’s pretty smooth sailing.

The reference list is straightforward. It should contain a list of all resources cited in your dissertation, in the required format, e.g. APA , Harvard, etc.

It’s essential that you use reference management software for your dissertation. Do NOT try handle your referencing manually – its far too error prone. On a reference list of multiple pages, you’re going to make mistake. To this end, I suggest considering either Mendeley or Zotero. Both are free and provide a very straightforward interface to ensure that your referencing is 100% on point. I’ve included a simple how-to video for the Mendeley software (my personal favourite) below:

Some universities may ask you to include a bibliography, as opposed to a reference list. These two things are not the same . A bibliography is similar to a reference list, except that it also includes resources which informed your thinking but were not directly cited in your dissertation. So, double-check your brief and make sure you use the right one.

The very last piece of the puzzle is the appendix or set of appendices. This is where you’ll include any supporting data and evidence. Importantly, supporting is the keyword here.

Your appendices should provide additional “nice to know”, depth-adding information, which is not critical to the core analysis. Appendices should not be used as a way to cut down word count (see this post which covers how to reduce word count ). In other words, don’t place content that is critical to the core analysis here, just to save word count. You will not earn marks on any content in the appendices, so don’t try to play the system!

Time to recap…

And there you have it – the traditional dissertation structure and layout, from A-Z. To recap, the core structure for a dissertation or thesis is (typically) as follows:

• Acknowledgments page

Most importantly, the core chapters should reflect the research process (asking, investigating and answering your research question). Moreover, the research question(s) should form the golden thread throughout your dissertation structure. Everything should revolve around the research questions, and as you’ve seen, they should form both the start point (i.e. introduction chapter) and the endpoint (i.e. conclusion chapter).

I hope this post has provided you with clarity about the traditional dissertation/thesis structure and layout. If you have any questions or comments, please leave a comment below, or feel free to get in touch with us. Also, be sure to check out the rest of the  Grad Coach Blog .

Psst... there’s more!

This post was based on one of our popular Research Bootcamps . If you're working on a research project, you'll definitely want to check this out ...

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36 Comments

many thanks i found it very useful

Glad to hear that, Arun. Good luck writing your dissertation.

Such clear practical logical advice. I very much needed to read this to keep me focused in stead of fretting.. Perfect now ready to start my research!

what about scientific fields like computer or engineering thesis what is the difference in the structure? thank you very much

Thanks so much this helped me a lot!

Very helpful and accessible. What I like most is how practical the advice is along with helpful tools/ links.

Thanks Ade!

Thank you so much sir.. It was really helpful..

You’re welcome!

Hi! How many words maximum should contain the abstract?

Thank you so much 😊 Find this at the right moment

You’re most welcome. Good luck with your dissertation.

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Many times Clarity and vision of destination of dissertation is what makes the difference between good ,average and great researchers the same way a great automobile driver is fast with clarity of address and Clear weather conditions .

I guess Great researcher = great ideas + knowledge + great and fast data collection and modeling + great writing + high clarity on all these

You have given immense clarity from start to end.

Morning. Where will I write the definitions of what I’m referring to in my report?

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Thank you for allowing me to go through briefly. I hope to find time to continue.

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Very interesting! It will definitely set me and many more for success. highly recommended.

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Usefull, thanks a lot. Really clear

Very nice and easy to understand. Thank you .

That was incredibly useful. Thanks Grad Coach Crew!

My stress level just dropped at least 15 points after watching this. Just starting my thesis for my grad program and I feel a lot more capable now! Thanks for such a clear and helpful video, Emma and the GradCoach team!

Do we need to mention the number of words the dissertation contains in the main document?

It depends on your university’s requirements, so it would be best to check with them 🙂

Such a helpful post to help me get started with structuring my masters dissertation, thank you!

Great video; I appreciate that helpful information

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This blog is very informative for my research. Thank you

Doctoral students are required to fill out the National Research Council’s Survey of Earned Doctorates

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How can i arrange my specific objectives in my dissertation?

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Biomedical Science

• Getting Started
• Books and eBooks
• FInding full-text articles
• Google Scholar
• Clinical Trials
• Open Science: key websites
• Dissertations and final year projects
• Referencing and Academic Integrity
• Academic Writing
• New Biomed Resources
• Useful LibGuides

Please note :

• TU Dublin use the word "dissertation" for work done as part of an undergraduate or taught master's course, and the word  "thesis" for work done for PhD or research masters degrees
• Dissertations and theses completed before 2019 were submitted to DIT, which preceded TU Dublin, and these are listed as Dublin Institute of Technology works .

Final Year Dissertations

Dissertations for a number of science undergraduate and taught postgraduate programs are available to view in pdf  format from 2014 onwards. To view the outline,  layout, citation style and referencing quality of a science eDissertation follow the steps below:

Start at the TU Dublin Library Catalogue

• From the drop-down search menu choose Subject or  Title Search
• Input your program code e.g. TU852. You can use either a current TU Dublin program code or an older DIT code.
• Select the e Dissertations option.
• Click on the blue dissertations link and view or download the pdf as required. 

 Tip: Sort by Reverse Year to view the newer titles.  

Research Theses

Arrow@TUDublin is the institutional repository for the university and is where researchers and staff  make a version of their theses and published articles or book chapters freely available. All material on Arrow is full text. The theses collection for MPhils and PhDs is also available on Arrow.

• Open Access Theses and Dissertations (OATD)  provides online access to graduate theses and dissertations from over 1100 colleges, universities, and research institutions from around the world.
• The  DART-Europe E-Theses Portal provides access to over 1.6 million open access research theses from 572 Universities in 29 European countries.
• The British Library EThOS theses online service  offers a search option to over 500,000 doctoral theses. Download instantly for your research, or order a scanned copy quickly and easily.

A selection of research theses is also available for use in TU Dublin Library.  A listing of hardcopy PhD theses is available here.  Please note that print theses are for use in the library only.

• << Previous: Open Science: key websites
• Next: Referencing and Academic Integrity >>
• Last Updated: Mar 20, 2024 5:41 PM
• URL: https://tudublin.libguides.com/biomedical_science

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Home > Animal Science > Dissertations, Theses, and Student Research

Animal Science, Department of

Department of animal science: dissertations, theses, and student research.

Forages and Technology Management in Growing and Finishing Beef Cattle Systems , Kelton Adair

Predicting Body Weight of Cattle and Nutrient Digestion of Individual Sweet Bran Components to Improve Beef Cattle Production Efficiency , Dalton J. Anderson

Factors Affecting Forage Quality and the Subsequent Response in Production and Energy Metabolism in Lactating Jersey Cows , Kassidy Kate Buse

Supplemental Table 1. Influence of the count of positive days on DMI, milk yield, milk fat, milk protein, and pregnancy rate , Addison Carroll and Paul J. Kononoff

The Evaluation of Feed Additives on Reducing Enteric Methane Production from Cattle , Reba L. Colin

Methods to Reduce Nitrogen and Carbon Losses from Finishing Beef Cattle , Hanna Cronk

Dry-Aged Beef Flavor Development, and the Effect of High Levels of Vitamin-E on Beef Color Stability , Nicolas Herrera

Mid-Gestation Maternofetal Inflammation Impacts Growth, Skeletal Muscle Glucose Metabolism, and Inflammatory Tone in the Ovine Fetus During Late Gestation , Zena Hicks

The Evaluation of Encapsulated Megasphaera elsdenii in an Accelerated Beef Step-Up Program and an Acidosis Challenge Model and the Evaluation of RAMP Versus a Traditional Forage Grain Adaptation Strategy on Methane and Respired Carbon Dioxide , Cindy D. Mansfield

The Impact of Silage Inclusion in Diets with Different Corn Processing and the Effect of Natural and Conventional Feeding Programs on Finishing Cattle Performance , Jessica L. Miller

Identification and Assessment of Lameness in Sows Through the Utilization of NUtrack AND GAITFour Systems , Lexi M. Ostrand

Students' Attitudes Towards Animals Influences Youth Development Constructs Based on Interactions with Different Animal Species Prior to College , Allison K. Pachunka

Winter Hardy Small Cereals for Grazing or Silage in Eastern Nebraska , Abigail Sartin

Consequences of cow-calf production with limited perennial forage grazing , Hannah Speer

Impact of Distillers Removal and Impact of Lowering Inclusions of Distillers Grains Plus Solubles and Different Roughage Quality on Finishing Cattle Performance , Sofia Suarez Lorences

Effect of Supplementation Prior to Artificial Insemination and During Gestation in Beef Females , Landon Tadich

Investigation of Breeding Objectives and Indexes-in-Retrospect , Hunter F. Valasek

Feed Value and Utilization of Corn Residue: Implications for Cow Performance and Grazing Strategies , Kaylee E. Wheeler

Early-Life Supplementation of Omega-3 Polyunsaturated Fatty Acids Improved Growth and Skeletal Muscle Glucose Metabolism in the Heat Stress-Induced IUGR Neonatal Lamb , Melanie Ryann White

ENVIRONMENTAL DETERMINATION OF GASTROINTESTINAL PARASITISM IN KATAHDIN SHEEP , Brian Arisman

Annotating Gene Expression and Regulatory Elements in Tissues from Healthy Thoroughbred Horses and Identifying Candidate Mutations Associated with Perosomus Elumbis in an Angus Calf , Alexa Barber

Impact of Increasing Level of Milk Production on Cow and Calf Behavior and Performance in the Nebraska Sandhills , Selby Boerman

Molecular Mechanisms Underlying Aberrant Circulating Steroid Hormones In GnRHR-II Knockdown Boars and Their Control Littermates , Dorothy Elsken

The Invisible Meat Microcosmos - Investigations of Processed Meats' Specific Spoilage Organisms , REBECCA FURBECK

Students' Perceptions of Online Equine Courses and Their Impacts on Learning Outcomes , Blaire (Gibbens) Speck

Impacts of Feeding Biochar to Beef Cattle on Greenhouse Gas Emissions and Performance and Characterizing Yearling Steers Grazing Smooth Bromegrass Pasture Using GPS , Holly Heil

The Nebraska 4-H Equine Advancement Level Program’s Role in Positive Youth Development Using the Five Cs Model: An Exploratory Study , Eunhye McCarthy

Identifying Early-Life Behavior to Predict Mothering Ability in Swine Utilizing NUtrack System , Savannah Millburn

Targeting Inflammation in Heat-Stressed Wethers Improves Growth and Efficiency and Alters Body Composition; A Brief Exploration and Application of Extension Principles , Micah Most

Evaluation of the Feeding Value of Proso Millet in Growing-Finishing Diets for Pigs and Effects of Feed Ingredients and Medium-Chain Fatty Acids on Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Survivability , Khang Nguyen

Variance Component Estimates for Growth Traits in Beef Cattle Using Selected Variants from Imputed Low-Pass Sequence Data , Chad A. Russell

Investigating Bacterial Community Composition and Antimicrobial Resistance Genes in Beef Cattle , Arena See

Evaluation of corn processing method and Sweet Bran inclusion on beef cattle performance and nutrient digestion and individual Sweet Bran components on nutrient digestion , Rebecca L. Sjostrand

The impact of plant cell wall lignin on energy utilization in lactating Jersey cows. , Jason Stypinski

The Impact of Steam-flaked Rye Replacing Steam-flaked Corn on Performance and Carcass Characteristics of Yearling Steers and The Effect of Exogenous Megasphaera elsdenii Administration Techniques on Ruminal Fermentation and Blood Parameters in an Acidosis Challenge Model , Samantha K. Wagner

Evaluation of Nutritional Factors Affecting Sow Reproductive Longevity , J'Nan E. Wittler

Using Strategic Supplementation to Enhance Cow/Calf Productivity in Summer Calving Herds in the Nebraska Sandhills , Nicole M. Woita

Host Genetics and Phenotype Associations Within the Bovine Rumen Microbiome , Waseem Abbas

Small Grain Cereal Cover Crops for Late Fall or Early Spring Grazing , Kallie Calus

Feeding a New Corn Milling Coproduct to Lactating Dairy Cattle; Examination of Whole Animal Energy and Nitrogen Balance , Addison Carroll

Evaluation of Grain Type and Processing Method on Steer Performance, Carcass Characteristics, and Nutrient Digestion , Caitlin Coulson

The Effects of Different Feed Supplements on Performance Parameters, Egg Measurements, and Eggshell Integrity in Older White Leghorn Laying Hens , Josephine Foley

Evaluation of Condensed Algal Residue Solubles as an Ingredient in Cattle Finishing Diets and Its Effects on Digestibility and Fatty Acid Flow and a Comparison of Single and Dual Implant Strategies in Finishing Heifers , John Gibbons

Evaluation of Cattle Management for Systems with Limited Perennial Pasture , Morgan Grabau

Management of Late Summer Planted Annual Forages for Grazing and the Impacts of Novel Sweet Bran Plus Products on Performance and Carcass Characteristics of Beef Finishing Steers , Devin Jakub

Changes in Whole Blood Parameters in Beef Heifers May Contribute to Delayed Pubertal Attainment , Jessica A. Keane

UNDERSTANDING RUMEN MICROBIAL COMMUNITY STRUCTURE AND FUNCTION TOWARDS DECREASING METHANE EMISSIONS , Allison L. Knoell

The Effects of Omega-3 PUFA Infusions During Late Gestation on Developmental Pathologies in the Intrauterine Growth Restricted Fetus , Taylor Lacey

Greenhouse Gas Emissions From Two Contrasting Beef Systems from Birth to Slaughter in Eastern Nebraska , Levi McPhillips

The Role of Fatty Acids in Ruminant Diets and Novel Feed Ingredients High in Omega– 3 Fatty Acids Fed in Feedlot Diets , Mitchell M. Norman

Utilizing Online Resources to Enhance Distribution of Competitive Animal Evaluation Knowledge and Benefits , Brooke L. Parrish

The Effect of Heat Stress and Beta-Adrenergic Agonists on Fatty Acid Mobilization and Their Individual and Interacting Impact on the Adipose Transcriptome of Ruminant Livestock , Rachel R. Reith

Variation in the Genome and Transcriptome Associated with Beef Cattle Production and Investigation of the Metabolic Consequences of Beta-adrenergic Agonist Supplementation , Renae L. Sieck

Low-Oxygen Dry Aging of Beef , Joseph Sonderman

Impact of Wood-Sourced Biochar on Carbon and Nitrogen Capture in Beef Feedlot Systems , Jessica L. Sperber

QUANTIFICATION AND REPEATED MEASUREMENTS OF CONFORMATION TRAITS IN REPLACEMENT FEMALES TO OPTIMIZE SOW LONGEVITY , Melanie D. Trenhaile Grannemann

ESTIMATION OF BREED EFFECTS AND GENETIC PARAMETERS FOR AGE AT SLAUGHTER AND DAYS TO FINISH IN A MULTIBREED BEEF CATTLE POPULATION , Lindsay Upperman

Enhancement of Dry-Aged Beef Quality by Dietary Supplementation of High Levels of Vitamin E , David Velazco

Advancing the Science of Dry-Aged Beef , Felipe Azevedo Ribeiro

Improving the Accuracy of Genomic Predictions: Investigation of Training Methods and Data Pooling , Johnna Baller

Evaluation of Maternal Diet and its Effect on Milk Composition and Piglet Health and Growth Performance , Shana Barnett

Investigating microbiomes and developing direct-fed microbials to improve cattle health , Alison Bartenslager

Comparison of comprehensive health score in North American housed giraffe and free-ranging giraffe from South Africa , Haley Beer

Impact of Diet and Quality Grade on Meat Quality Characteristics and Their Relationship to Oxidative Stress , Nicolas Bland

Characterization of protein and fat in dairy feeds and implications on digestibility and milk composition , Kassidy Buse

The Role of Postnatal Adrenergic Manipulation in the Mediation of Fetal Programming Adaptions in Growth and Skeletal Muscle Glucose Metabolism That Persist in the Juvenile IUGR-born Lamb , Rachel L. Gibbs

The Impact of Oxidative Stress on Postmortem Meat Quality , Nicolas J. Herrera

Influence of Strategic Supplementation and Genetic Potential for Milk Yield on Forage Digestibility, Amino Acid Utilization, and Livestock Production , Tasha M. King

Effects of NDF digestibility on Lactating Jersey Cows: Observed and Modeled Performance , Kirby Krogstad

Interaction of Urea with Frequency and Amount of Distillers Grains Supplementation for Growing Steers on a High Forage Diet , Haley F. Linder

ENERGY AND AMINO ACID METABOLISM IN LACTATING JERSEY COWS CONSUMING FEED BYPRODUCTS , Kyle McLain

Energy metabolism in Jersey cows: Improving our understanding of energy requirements and utilization , Dennis Morris

Evaluation of Protein Sources and Holstein Finishing Systems for Organic Beef Production and a Comparison of Single and Dual Implant Strategies in Finishing Heifers , Elizabeth Schumacher

Heat stress-induced deficits in growth, metabolic efficiency, and cardiovascular function coincided with chronic systemic inflammation and hypercatecholaminemia in ractopamine-supplemented feedlot lambs; Atypical cyclicity at puberty in beef cows is associated with early deficits in muscling, metabolic indicators, and myoblast function in offspring but does not impact feedlot performance. , Rebecca M. Swanson

Translational Genomics For Improving Sow Fertility , Hiruni R. Wijesena

EVALUATION OF NOVEL ADDITIVES AND CORN SILAGE AS NATURAL ALTERNATIVES TO ANTIBIOTICS FOR THE PREVENTION OF RUMINAL ACIDOSIS AND LIVER ABSCESSES IN BEEF FINISHING CATTLE , Hannah C. Wilson

IMPACT OF COW SIZE AND VALIDATION OF AN ELECTRONIC FEEDER TO OPTIMIZE RESOURCES IN BEEF PRODUCTION SYSTEMS , Rob Ziegler

Evaluation of Microbial Community Dynamics Impacting the Shelf-Life of Processed Meats , Chad G. Bower

Evaluation of Alpha Amylase Containing Corn on Beef Cattle Performance and Digestibility and Double-Cropped Annual Forages Following Corn Harvest , McKenna Brinton

Effects of Late Gestation Supplementation and Creep Feeding on Spring Calving Beef Cows in the Nebraska Sandhills , Devin Broadhead

Impact of Feeding Distillers Grains or Isolated Components in Distillers Grains to Growing and Finishing Cattle, and the Comparison of Protein Content and In-Situ Digestibility of Feeds Commonly Used in Feedlot Diets , Brianna B. Conroy

Selective harvest methods and chemical treatment of baled corn residue for utilization in growing calf and dry cow diets , Ashley C. Conway

Impact of Beta-Adrenergic Agonist Supplementation and Heat Stress on the Microbiome and Gastrointestinal Transcriptome of Sheep , Erin M. Duffy

Beef Production Systems in the Nebraska Sandhills , McKay Erickson

The Effects of Butyric Acid on Performance Parameters, Egg Quality and Nutrient Utilization in Young White Leghorn Hens , Dani-el Hanna

Impact of Myoglobin Oxygenation State on Color Stability of Beef Steaks During Frozen Storage and Thawed Retail Display , Morgan Lee Henriott

Effects of Alternative Carbohydrate Sources and Soybean-Derived Isoflavones on the Microbiome and Immune System of Nursery Piglets and Intestinal Porcine Epithelial Cell Line J-2 , Sydney Kinstler

Undergraduate Success in Animal Science Courses Based on Demographics, Motivation, and Online Courses , Haylee Anne Lavoie

Attainment and Maintenance of Pubertal Cyclicity May Predict High A4 Cows with Reduced Fertility , Sarah Nafziger

The Utilization of Brown Midrib Corn Silage Hybrids and Kernel Processing to Improve Corn Silage Value and the Use of High Protein Distillers Grains to Evaluate Starch Digestion , Lauren A. Ovinge

The Role of Inflammatory Pathways in Development, Growth, and Metabolism of Skeletal Muscle in IUGR Offspring; Blood Gene Expression of Inflammatory Factors as Novel Biomarkers for Assessing Stress and Wellbeing in Exotic Species. , Robert J. Posont

Evaluation of Protein Utilization in Low and High Protein Forage Sources and the Economic Value of Supplementing Field Peas (pisum sativum) to Growing Cattle Grazing Crested Wheatgrass Pastures , Braden C. Troyer

SURVEILLANCE AND EVALUATION OF MANURE TREATMENT PRACTICES FOR MITIGATION OF THE PORCINE EPIDEMIC DIARRHEA VIRUS (PEDV) IN A COMMERCIAL SWINE FARM SETTING , Erin Boyles

Corn Residue Grazing as a Component of Semi-Confined Cow-Calf Production and the Effects of Post-weaning Management on Feedlot Performance , Shelby E. Gardine

Impact of ethanol process changes on distillers grains for beef cattle , Shelby Garland

GENOME-WIDE ASSOCIATION STUDY FOR THE RELATIONSHIP BETWEEN TEMPERATURE AND FEED INTAKE IN BEEF CATTLE , Robel Ghebrewold

Quality Effects on Beef from Cattle Fed High-Protein Corn Distillers Grains or Other Ethanol By-Products , Kellen B. Hart

Effect of corn silage harvest, hybrid, and concentration on performance in growing and finishing beef cattle , Fred H. Hilscher Jr

EVALUATION OF ALPHA AMYLASE CONTAINING CORN ON FINISHING CATTLE PERFORMANCE AND DIGESTIBILTY , Melissa L. Jolly-Breithaupt

Evaluation of the Interaction of Beta-Adrenergic Agonists Supplementation and Heat Stress on Growth Performance and Carcass Composition in Feeder Lambs , Lauren Elisabeth Kett

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Department of History

Best undergraduate dissertations 2019.

Since 2009 the Department of History at the University of Bristol has published the best of the annual dissertations produced by our final-year undergraduates. We do so in recognition of the excellent research undertaken by our students, which is a  cornerstone of our degree programme . As a department, we are committed to the advancement of historical knowledge and to research of the highest order. Our undergraduates are part of that endeavour.

Listed below are the the best of this year’s undergraduate history dissertations, with links to the dissertations themselves where these are available. Please note that these dissertations are published in the state they were submitted for examination. Thus the authors have not been able to correct errors and/or departures from departmental guidelines for the presentation of dissertations (eg in the formatting of footnotes and bibliographies). In each case, copyright resides with the author and all rights are reserved.